RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 PPANQ9NQ55 473 aaKnown RBP3.99□□□□□ -1.77
USP4-209ENST00000475873 TAS2R9Q9NYW1 312 aa3.99□□□□□ -1.77
USP4-209ENST00000475873 UPB1Q9UBR1 384 aa3.99□□□□□ -1.77
USP4-209ENST00000475873 FBLN5Q9UBX5 448 aa3.99□□□□□ -1.77
USP4-209ENST00000475873 EGFL7Q9UHF1 273 aa3.99□□□□□ -1.77
USP4-209ENST00000475873 C19orf53Q9UNZ5 99 aaPredicted RBP3.99□□□□□ -1.77
USP4-209ENST00000475873 CARD8Q9Y2G2 431 aa3.99□□□□□ -1.77
USP4-209ENST00000475873 RNF11Q9Y3C5 154 aa3.99□□□□□ -1.77
USP4-209ENST00000475873 LSM4Q9Y4Z0 139 aaKnown RBP3.99□□□□□ -1.77
USP4-209ENST00000475873 HSPG2P98160 4391 aa3.99□□□□□ -1.77
USP4-209ENST00000475873 A0A087WV62 115 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 IGHV2-70DA0A0C4DH43 119 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 A0A0U1RQK1 487 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 A0A1W2PQD3 144 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 AGAP5A6NIR3 686 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 GOLGA6L6A8MZA4 724 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 MYO1GB0I1T2 1018 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 K7EPI3 171 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 GPR171O14626 319 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 UPK3AO75631 287 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 KCNK2O95069 426 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 CD28P10747 220 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 ACP2P11117 423 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 NEFHP12036 1026 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 ZNF14P17017 642 aaPredicted RBP3.98□□□□□ -1.77
USP4-209ENST00000475873 PAX7P23759 505 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 GLRXP35754 106 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 ETV4P43268 484 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 KCNJ1P48048 391 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 MMP16P51512 607 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 UBE2NP61088 152 aaKnown RBP3.98□□□□□ -1.77
USP4-209ENST00000475873 ERVS71-1P61550 626 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 BST1Q10588 318 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 IFT88Q13099 833 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 QPRTQ15274 297 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 TIGD2Q4W5G0 525 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 HSP90B2PQ58FF3 399 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 SYT14P1Q58G82 188 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 CDKL4Q5MAI5 379 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 CCNJQ5T5M9 372 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 DHRS7BQ6IAN0 325 aaPredicted RBP3.98□□□□□ -1.77
USP4-209ENST00000475873 C3orf33Q6P1S2 294 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 TMEM107Q6UX40 140 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 ZC3HC1Q86WB0 502 aaKnown RBP3.98□□□□□ -1.77
USP4-209ENST00000475873 GAS2L3Q86XJ1 694 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 MYLK4Q86YV6 388 aaPredicted RBP3.98□□□□□ -1.77
USP4-209ENST00000475873 OR2L13Q8N349 312 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 TCAIMQ8N3R3 496 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 L3MBTL4Q8NA19 623 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 KIF18AQ8NI77 898 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 PIGXQ8TBF5 258 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 WIPF2Q8TF74 440 aaPredicted RBP3.98□□□□□ -1.77
USP4-209ENST00000475873 UBTD2Q8WUN7 234 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 CCL17Q92583 94 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 RAB1CQ92928 201 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 EXT2Q93063 718 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 OTUB1Q96FW1 271 aaPredicted RBP3.98□□□□□ -1.77
USP4-209ENST00000475873 AURKBQ96GD4 344 aaPredicted RBP3.98□□□□□ -1.77
USP4-209ENST00000475873 CCDC42Q96M95 316 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 RCHY1Q96PM5 261 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 RHOXF2Q9BQY4 288 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 FRMD8P1Q9BZ68 369 aaPredicted RBP3.98□□□□□ -1.77
USP4-209ENST00000475873 OR11A1Q9GZK7 315 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 DERL2Q9GZP9 239 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 TMEM165Q9HC07 324 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 PALMDQ9NP74 551 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 HINT3Q9NQE9 182 aaKnown RBP3.98□□□□□ -1.77
USP4-209ENST00000475873 FARSBQ9NSD9 589 aaKnown RBP3.98□□□□□ -1.77
USP4-209ENST00000475873 ABHD10Q9NUJ1 306 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 TMEM45AQ9NWC5 275 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 B3GNT2Q9NY97 397 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 NKIRAS2Q9NYR9 191 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 CD274Q9NZQ7 290 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 TAAR3PQ9P1P4 343 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 DUSP13Q9UII6 198 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 GRID1Q9ULK0 1009 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 PCDHGA11Q9Y5H2 935 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 ZNF780BQ9Y6R6 833 aa3.98□□□□□ -1.77
USP4-209ENST00000475873 DSPPQ9NZW4 1301 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 VPS13DQ5THJ4 4388 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 IGLV3-9A0A075B6K5 115 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 CENPVL1A0A0U1RR11 272 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 CENPVL3A0A0U1RRI6 287 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 FAM95CA0A1B0GW59 222 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 A0A1W2PPW3 197 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 MAGEB16A2A368 324 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 VSTM5A8MXK1 200 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 E9PQ18 207 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 GOLGA6L22H0YM25 854 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 UBXN8O00124 270 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 ANGPTL7O43827 346 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 DNAJA2O60884 412 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 COQ9O75208 318 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 BCAS1O75363 584 aaPredicted RBP3.97□□□□□ -1.77
USP4-209ENST00000475873 NKX2-2O95096 273 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 NUDT14O95848 222 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 LHBP01229 141 aa3.97□□□□□ -1.77
USP4-209ENST00000475873 JUNP05412 331 aaKnown RBP3.97□□□□□ -1.77
USP4-209ENST00000475873 IL3P08700 152 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms