RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 DNAJC27Q9NZQ0 273 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 ERVK-18Q9QC07 812 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 ZNF229Q9UJW7 825 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 HIF3AQ9Y2N7 669 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 SNX5Q9Y5X3 404 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 A0A087WZY1 265 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 CDK2AP1O14519 115 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 ZNF208O43345 1280 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 MT-ATP6P00846 226 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 BGLAPP02818 100 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 TSPAN19P0C672 248 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 PIPP12273 146 aaPredicted RBP12.78□□□□□ -0.36
SS18-201ENST00000269137 PEPDP12955 493 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 CCNA2P20248 432 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 CYB561P49447 251 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 FOXK2Q01167 660 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 PIGFQ07326 219 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 INPP5JQ15735 1006 aaPredicted RBP12.78□□□□□ -0.36
SS18-201ENST00000269137 TMEM44Q2T9K0 475 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 POMZP3Q6PJE2 187 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 DPY19L2P2Q6ZN68 376 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 AHSA2Q719I0 299 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 CLEC1AQ8NC01 280 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 OR6S1Q8NH40 331 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 THAP4Q8WY91 577 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 DGCR14Q96DF8 476 aaKnown RBP12.78□□□□□ -0.36
SS18-201ENST00000269137 TMEM41AQ96HV5 264 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 PLEKHA8Q96JA3 519 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 ZNF582Q96NG8 517 aaPredicted RBP12.78□□□□□ -0.36
SS18-201ENST00000269137 MOGAT1Q96PD6 335 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 GPX7Q96SL4 187 aaPredicted RBP12.78□□□□□ -0.36
SS18-201ENST00000269137 RHNO1Q9BSD3 238 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 COPS4Q9BT78 406 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 PTDSS2Q9BVG9 487 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 FN3KQ9H479 309 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 CHRNA9Q9UGM1 479 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 FBXL2Q9UKC9 423 aa12.78□□□□□ -0.36
SS18-201ENST00000269137 RPL36Q9Y3U8 105 aaKnown RBP12.78□□□□□ -0.36
SS18-201ENST00000269137 ZC3H12DA2A288 527 aaKnown RBP12.77□□□□□ -0.37
SS18-201ENST00000269137 SNTNA6NMZ2 147 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 KDM4EB2RXH2 506 aaPredicted RBP12.77□□□□□ -0.37
SS18-201ENST00000269137 FAM47E-STBD1D6RA91 191 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 CDK1P06493 297 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 ITGA3P26006 1051 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 ADH6P28332 368 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 GSTT1P30711 240 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 EIF1P41567 113 aaKnown RBP12.77□□□□□ -0.37
SS18-201ENST00000269137 SOX8P57073 446 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 FOXF1Q12946 379 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 FAM69AQ5T7M9 428 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 ABHD17BQ5VST6 288 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 C1orf140Q5VVS0 124 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 TIGD3Q6B0B8 471 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 XAF1Q6GPH4 301 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 MDGA2Q7Z553 956 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 C10orf53Q8N6V4 93 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 CMC2Q9NRP2 79 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 SACM1LQ9NTJ5 587 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 GPR83Q9NYM4 423 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 ABI3Q9P2A4 366 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 VDAC3Q9Y277 283 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 CPAMD8Q8IZJ3 1885 aa12.77□□□□□ -0.37
SS18-201ENST00000269137 DLL1O00548 723 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 ARPC3O15145 178 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 PRODHO43272 600 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 IDH3BO43837 385 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 OR2T1O43869 369 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 TRIM3O75382 744 aaPredicted RBP12.76□□□□□ -0.37
SS18-201ENST00000269137 P04436 131 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 PCMT1P22061 227 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 UQCRC1P31930 480 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 RPS5P46782 204 aaKnown RBP12.76□□□□□ -0.37
SS18-201ENST00000269137 RRADP55042 308 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 RSPO4Q2I0M5 234 aaPredicted RBP12.76□□□□□ -0.37
SS18-201ENST00000269137 AADACL4Q5VUY2 407 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 C1QL3Q5VWW1 255 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 ARHGAP11AQ6P4F7 1023 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 VASH2Q86V25 355 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 ZNF227Q86WZ6 799 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 SVOPQ8N4V2 548 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 ANKK1Q8NFD2 765 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 POC1BQ8TC44 478 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 ZBTB8AQ96BR9 441 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 NPAS1Q99742 590 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 TUBA1CQ9BQE3 449 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 CCDC90BQ9GZT6 254 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 NRIP3Q9NQ35 241 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 WDR70Q9NW82 654 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 GPR52Q9Y2T5 361 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 AHSA1O95433 338 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 PPP1R3DO95685 299 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 MT-ND2P03891 347 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 HIST1H2ABP04908 130 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 APEHP13798 732 aaKnown RBP12.76□□□□□ -0.37
SS18-201ENST00000269137 MVKQ03426 396 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 EMX1Q04741 257 aaPredicted RBP12.76□□□□□ -0.37
SS18-201ENST00000269137 ZNF91Q05481 1191 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 ST3GAL4Q11206 333 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 ZNF362Q5T0B9 420 aaPredicted RBP12.76□□□□□ -0.37
SS18-201ENST00000269137 BORAQ6PGQ7 559 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms