RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PRODHO43272 600 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 PGCP20142 388 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 DLSTP36957 453 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 IL10RAQ13651 578 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 CBFBQ13951 182 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 AADACL4Q5VUY2 407 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 MRGPREQ86SM8 312 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 LNX2Q8N448 690 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 PCSK5Q92824 1860 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 JSRP1Q96MG2 331 aaPredicted RBP14.98□□□□□ -0.01
USP4-201ENST00000265560 KATNB1Q9BVA0 655 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 EXOSC3Q9NQT5 275 aaKnown RBP14.98□□□□□ -0.01
USP4-201ENST00000265560 TAS2R10Q9NYW0 307 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 H2AFY2Q9P0M6 372 aaPredicted RBP14.98□□□□□ -0.01
USP4-201ENST00000265560 LOC100506127A0A0U1RQW1 187 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 H3BML4 177 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 H7C1C5 153 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 PLGP00747 810 aaPredicted RBP14.98□□□□□ -0.01
USP4-201ENST00000265560 PEPDP12955 493 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 HCCSP53701 268 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 LCN6P62502 163 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 TMEM164Q5U3C3 297 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 LYPD4Q6UWN0 246 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 ADGRG3Q86Y34 549 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 ZFP41Q8N8Y5 198 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 FAM98AQ8NCA5 519 aaKnown RBP14.98□□□□□ -0.01
USP4-201ENST00000265560 SLC37A3Q8NCC5 494 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 NMNAT3Q96T66 252 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 LRFN3Q9BTN0 628 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 ADAM19Q9H013 955 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 MMP25Q9NPA2 562 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 IL17BQ9UHF5 180 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 RTTNQ86VV8 2226 aa14.98□□□□□ -0.01
USP4-201ENST00000265560 SPTBN4Q9H254 2564 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 CCDC187A0A096LP49 1063 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 TMED7-TICAM2A0A0A6YYA0 188 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 SUSD5O60279 629 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 ITGADQ13349 1161 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 ZNF74Q16587 644 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 ZSWIM7Q19AV6 140 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 MDGA2Q7Z553 956 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 CYP4Z2PQ8N1L4 340 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 NDNFQ8TB73 568 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 ZNRF4Q8WWF5 429 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 GATAD2BQ8WXI9 593 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 SPACA9Q96E40 222 aaPredicted RBP14.97□□□□□ -0.01
USP4-201ENST00000265560 TSSK2Q96PF2 358 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 MYCBPQ99417 103 aaPredicted RBP14.97□□□□□ -0.01
USP4-201ENST00000265560 TEX12Q9BXU0 123 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 TMED7Q9Y3B3 224 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 A0A1W2PQD3 144 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 DLGAP3O95886 979 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 PNMTP11086 282 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 AHCYP23526 432 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 ACVR2AP27037 513 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 TBCEQ15813 527 aaPredicted RBP14.97□□□□□ -0.01
USP4-201ENST00000265560 CTF1Q16619 201 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 TSTQ16762 297 aaKnown RBP14.97□□□□□ -0.01
USP4-201ENST00000265560 C7orf57Q8NEG2 295 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 SLC35B4Q969S0 331 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 LIN37Q96GY3 246 aaPredicted RBP14.97□□□□□ -0.01
USP4-201ENST00000265560 ARL5BQ96KC2 179 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 Q96M85 177 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 MGLLQ99685 303 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 ZNF700Q9H0M5 742 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 PPP4R1LQ9P1A2 415 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 TMEM72A0PK05 275 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 EIF4E2O60573 245 aaKnown RBP14.97□□□□□ -0.01
USP4-201ENST00000265560 NOL3O60936 208 aaKnown RBP14.97□□□□□ -0.01
USP4-201ENST00000265560 OR7A10O76100 309 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 HMGN1P05114 100 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 GADD45AP24522 165 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 TTKP33981 857 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 TGFBR2P37173 567 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 GAS1P54826 345 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 EFR3AQ14156 821 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 NDUFAF7Q7L592 441 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 P2RY8Q86VZ1 359 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 TMEM156Q8N614 296 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 OR51E2Q9H255 320 aa14.97□□□□□ -0.01
USP4-201ENST00000265560 CNOT2Q9NZN8 540 aaKnown RBP14.97□□□□□ -0.01
USP4-201ENST00000265560 RPH3AQ9Y2J0 694 aaPredicted RBP14.97□□□□□ -0.01
USP4-201ENST00000265560 DNAJC13O75165 2243 aa14.96□□□□□ -0.01
USP4-201ENST00000265560 LOC101059948A0A1B0GTJ6 334 aa14.96□□□□□ -0.01
USP4-201ENST00000265560 SLC25A12O75746 678 aa14.96□□□□□ -0.01
USP4-201ENST00000265560 NDUFB2O95178 105 aa14.96□□□□□ -0.01
USP4-201ENST00000265560 FTH1P19P0C7X4 201 aa14.96□□□□□ -0.01
USP4-201ENST00000265560 CASP3P42574 277 aa14.96□□□□□ -0.01
USP4-201ENST00000265560 RPS15P62841 145 aaKnown RBP14.96□□□□□ -0.01
USP4-201ENST00000265560 C19orf57Q0VDD7 668 aa14.96□□□□□ -0.01
USP4-201ENST00000265560 IRF3Q14653 427 aa14.96□□□□□ -0.01
USP4-201ENST00000265560 ZNF791Q3KP31 576 aaPredicted RBP14.96□□□□□ -0.01
USP4-201ENST00000265560 UBE2UQ5VVX9 321 aa14.96□□□□□ -0.01
USP4-201ENST00000265560 MEDAGQ5VYS4 303 aa14.96□□□□□ -0.01
USP4-201ENST00000265560 RPS19BP1Q86WX3 136 aaKnown RBP14.96□□□□□ -0.01
USP4-201ENST00000265560 SLC22A8Q8TCC7 542 aa14.96□□□□□ -0.01
USP4-201ENST00000265560 P4HTMQ9NXG6 502 aa14.96□□□□□ -0.01
USP4-201ENST00000265560 ERGIC3Q9Y282 383 aa14.96□□□□□ -0.01
USP4-201ENST00000265560 SPENQ96T58 3664 aaKnown RBP14.96□□□□□ -0.01
USP4-201ENST00000265560 KDM4EB2RXH2 506 aaPredicted RBP14.96□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms