RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 BRIX1Q8TDN6 353 aaKnown RBP11.66□□□□□ -0.54
LIG1-201ENST00000263274 ADGRL4Q9HBW9 690 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 SRA1Q9HD15 236 aaKnown RBP11.66□□□□□ -0.54
LIG1-201ENST00000263274 NOX4Q9NPH5 578 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 ZNF69Q9UC07 566 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 NUBP2Q9Y5Y2 271 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 H0YGG7 62 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 ARPC1BO15143 372 aaKnown RBP11.66□□□□□ -0.54
LIG1-201ENST00000263274 SMAD9O15198 467 aaKnown RBP11.66□□□□□ -0.54
LIG1-201ENST00000263274 ICAM2P13598 275 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 IL9P15248 144 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 RPS27P42677 84 aaKnown RBP11.66□□□□□ -0.54
LIG1-201ENST00000263274 TAS2R43P59537 309 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 ARF3P61204 181 aaPredicted RBP11.66□□□□□ -0.54
LIG1-201ENST00000263274 BTG1P62324 171 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 PPP2CBP62714 309 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 PPP2CAP67775 309 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 EEF1A1P68104 462 aaKnown RBP11.66□□□□□ -0.54
LIG1-201ENST00000263274 PITPNAQ00169 270 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 ZNF776Q68DI1 518 aaPredicted RBP11.66□□□□□ -0.54
LIG1-201ENST00000263274 HSD17B8Q92506 261 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 RIT1Q92963 219 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 YIPF5Q969M3 257 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 C10orf90Q96M02 699 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 TSSK2Q96PF2 358 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 SEC22CQ9BRL7 303 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 NANSQ9NR45 359 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 KLK11Q9UBX7 282 aa11.66□□□□□ -0.54
LIG1-201ENST00000263274 RDH16O75452 317 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 HPXP02790 462 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 RLN1P04808 185 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 IFNA16P05015 189 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 EMDP50402 254 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 ZBTB37Q5TC79 503 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 ABHD13Q7L211 337 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 KANSL1Q7Z3B3 1105 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 CDRT4Q8N9R6 151 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 ZNF511Q8NB15 262 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 CAMKVQ8NCB2 501 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 RBM18Q96H35 190 aaKnown RBP11.65□□□□□ -0.54
LIG1-201ENST00000263274 ZNF764Q96H86 408 aaPredicted RBP11.65□□□□□ -0.54
LIG1-201ENST00000263274 SERINC2Q96SA4 455 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 POT1Q9NUX5 634 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 HRASLS2Q9NWW9 162 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 FKBP7Q9Y680 259 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 TEX51A0A1B0GUA7 166 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 LINC01553A4QN01 128 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 PLPP2O43688 288 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 GMDSO60547 372 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 RAD1O60671 282 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 FMO6PO60774 539 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 EPXP11678 715 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 PER3P56645 1201 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 NRG3P56975 720 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 SIRPAP78324 504 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 ZNHIT3Q15649 155 aaPredicted RBP11.65□□□□□ -0.54
LIG1-201ENST00000263274 ZNF425Q6IV72 752 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 PAQR7Q86WK9 346 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 RASD2Q96D21 266 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 NKX3-1Q99801 234 aaPredicted RBP11.65□□□□□ -0.54
LIG1-201ENST00000263274 RPP25Q9BUL9 199 aaKnown RBP11.65□□□□□ -0.54
LIG1-201ENST00000263274 ATPIF1Q9UII2 106 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 KLF4O43474 513 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 UBL3O95164 117 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 SERPINA3P01011 423 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 ALDOBP05062 364 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 HPGDP15428 266 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 UGT2B7P16662 529 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 PTBP1P26599 531 aaKnown RBP eCLIP11.65□□□□□ -0.547e-7■■■■□ 23
LIG1-201ENST00000263274 THBS2P35442 1172 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 BTN1A1Q13410 526 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 TEX261Q6UWH6 196 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 TPRA1Q86W33 373 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 SLC35F2Q8IXU6 374 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 CMTM4Q8IZR5 234 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 TTC9Q92623 222 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 KISS1RQ969F8 398 aaPredicted RBP11.65□□□□□ -0.54
LIG1-201ENST00000263274 KCTD12Q96CX2 325 aaKnown RBP11.65□□□□□ -0.54
LIG1-201ENST00000263274 PELI1Q96FA3 418 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 CNN2Q99439 309 aaKnown RBP11.65□□□□□ -0.54
LIG1-201ENST00000263274 PLA2G2FQ9BZM2 168 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 CD93Q9NPY3 652 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 RDH8Q9NYR8 311 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 HCN3Q9P1Z3 774 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 U3KQ87 197 aa11.65□□□□□ -0.54
LIG1-201ENST00000263274 MEIS3P1A6NDR6 274 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 POM121CA8CG34 1229 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 ADH1BP00325 375 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 FBXO45P0C2W1 286 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 LCN1P31025 176 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 BLVRAP53004 296 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 ACSM1Q08AH1 577 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 GPM6BQ13491 265 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 C1orf61Q13536 156 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 SLC36A2Q495M3 483 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 GARNL3Q5VVW2 1013 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 HEPHL1Q6MZM0 1159 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 ARSKQ6UWY0 536 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 APOOLQ6UXV4 268 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 COMMD7Q86VX2 200 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms