RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 TMEM92Q6UXU6 159 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 SAMD14Q8IZD0 417 aaPredicted RBP11.85□□□□□ -0.51
LDLR-207ENST00000558013 METTL27Q8N6F8 245 aaPredicted RBP11.85□□□□□ -0.51
LDLR-207ENST00000558013 OR4C3Q8NH37 302 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 GRPEL2Q8TAA5 225 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 RSC1A1Q92681 617 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 CTHRC1Q96CG8 243 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 CDCP1Q9H5V8 836 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 AUNIPQ9H7T9 357 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 LRIT1Q9P2V4 623 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 A0A0A6YYC8 382 aaPredicted RBP11.85□□□□□ -0.51
LDLR-207ENST00000558013 PRR32B1ATL7 298 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 I3L1I5 382 aaPredicted RBP11.85□□□□□ -0.51
LDLR-207ENST00000558013 MT-ND4P03905 459 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 S1PR1P21453 382 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 CLDN12P56749 244 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 RPS11P62280 158 aaKnown RBP eCLIP11.85□□□□□ -0.51
LDLR-207ENST00000558013 OTPQ5XKR4 325 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 PRR23CQ6ZRP0 262 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 Q6ZSR6 202 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 SERPINA12Q8IW75 414 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 OR13H1Q8NG92 308 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 OR11H4Q8NGC9 324 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 BAHD1Q8TBE0 780 aaPredicted RBP11.85□□□□□ -0.51
LDLR-207ENST00000558013 FAM131CQ96AQ9 280 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 CREB3L1Q96BA8 519 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 TSSK2Q96PF2 358 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 SLC25A18Q9H1K4 315 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 FKRPQ9H9S5 495 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 CPNE7Q9UBL6 633 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 GNG8Q9UK08 70 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 ZNF222Q9UK12 451 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 PCOLCE2Q9UKZ9 415 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 SATB2Q9UPW6 733 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 NCKAP1Q9Y2A7 1128 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 A0A1B0GVT2 93 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 URADA6NGE7 173 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 ST6GAL1P15907 406 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 HK1P19367 917 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 BTG2P78543 158 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 MAB21L1Q13394 359 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 TNK1Q13470 666 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 RTL4Q6ZR62 310 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 SLC22A18ASQ8N1D0 253 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 ZNF687Q8N1G0 1237 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 RCBTB1Q8NDN9 531 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 PCNPQ8WW12 178 aaKnown RBP11.84□□□□□ -0.51
LDLR-207ENST00000558013 YIPF5Q969M3 257 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 RASD2Q96D21 266 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 GABRG3Q99928 467 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 KLHDC3Q9BQ90 382 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 NKIRAS2Q9NYR9 191 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 MPDZO75970 2070 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 ATG2AQ2TAZ0 1938 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 A0A087WV62 115 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 ACOD1A6NK06 481 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 NOTOA8MTQ0 251 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 GALP22466 123 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 GDI2P50395 445 aaKnown RBP11.84□□□□□ -0.51
LDLR-207ENST00000558013 SDE2Q6IQ49 451 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 FBXO46Q6PJ61 603 aaPredicted RBP11.84□□□□□ -0.51
LDLR-207ENST00000558013 AVL9Q8NBF6 648 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 OR6K6Q8NGW6 343 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 SLC37A2Q8TED4 501 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 STACQ99469 402 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 LYRM4Q9HD34 91 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 SLCO1C1Q9NYB5 712 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 GMFGO60234 142 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 EPXP11678 715 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 PTBP1P26599 531 aaKnown RBP eCLIP11.84□□□□□ -0.512e-11■□□□□ 9.4
LDLR-207ENST00000558013 RBMS1P29558 406 aaKnown RBP11.84□□□□□ -0.51
LDLR-207ENST00000558013 RPL4P36578 427 aaKnown RBP11.84□□□□□ -0.51
LDLR-207ENST00000558013 KIAA1024LP59773 190 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 NPSR1Q6W5P4 371 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 OR51Q1Q8NH59 317 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 C2orf42Q9NWW7 574 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 CHRNA9Q9UGM1 479 aa11.84□□□□□ -0.51
LDLR-207ENST00000558013 OR6C68A6NDL8 312 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 MEN1O00255 615 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 TPMTP51580 245 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 NRG3P56975 720 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 ERVK-25P63136 954 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 MRPL28Q13084 256 aaKnown RBP11.83□□□□□ -0.52
LDLR-207ENST00000558013 HES5Q5TA89 166 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 TIGD3Q6B0B8 471 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 ZNF613Q6PF04 617 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 GPALPP1Q8IXQ4 340 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 ZNF655Q8N720 491 aaPredicted RBP11.83□□□□□ -0.52
LDLR-207ENST00000558013 HMGB4Q8WW32 186 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 ZNF524Q96C55 264 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 CCDC3Q9BQI4 270 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 ZNF426Q9BUY5 554 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 MED28Q9H204 178 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 GHITMQ9H3K2 345 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 POT1Q9NUX5 634 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 FLVCR2Q9UPI3 526 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 TMEM5Q9Y2B1 443 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 TRBV2A0A0J9YWF9 115 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 NKX2-2O95096 273 aa11.83□□□□□ -0.52
LDLR-207ENST00000558013 TCRBP04435 133 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms