RNA–Protein interactions for RNA: ENST00000508974.5

UBE2D3-228, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-228ENST00000508974 ZNF724A8MTY0 619 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 HMGB1P1B2RPK0 211 aaPredicted RBP13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 FRS3O43559 492 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 TGDSO95455 350 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 IMPDH2P12268 514 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 NCF2P19878 526 aaPredicted RBP13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 FPR1P21462 350 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 CXCR1P25024 350 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 HTR3AP46098 478 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 BNIP2Q12982 314 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 ITGADQ13349 1161 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 AGKQ53H12 422 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 PAGE3Q5JUK9 113 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 Q6ZT83 130 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 P3H2Q8IVL5 708 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 CLIP4Q8N3C7 705 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 SPDL1Q96EA4 605 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 PERPQ96FX8 193 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 CCDC28BQ9BUN5 200 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 HDHD5Q9BXW7 423 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 SLC25A37Q9NYZ2 338 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 EMC3Q9P0I2 261 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 ACANP16112 2415 aa13.11□□□□□ -0.31
UBE2D3-228ENST00000508974 A0A096LPI6 279 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 A0A0G2JPF8 293 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 HNRNPCL2B2RXH8 293 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 HNRNPCL3B7ZW38 293 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 C5orf58C9J3I9 102 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 CLOCKO15516 846 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 HNRNPCL1O60812 293 aaKnown RBP13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 HNRNPCL4P0DMR1 293 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 HOXB9P17482 250 aaPredicted RBP13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 IGHV1-2P23083 117 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 ADSLP30566 484 aaPredicted RBP13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 HOXC12P31275 282 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 ACAA2P42765 397 aaKnown RBP13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 MAGEA8P43361 318 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 NR1H2P55055 460 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 HOXC5Q00444 222 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 LARS2Q15031 903 aaKnown RBP13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 P2RY6Q15077 328 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 ZNF311Q5JNZ3 666 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 Q5PR19 223 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 BLOC1S3Q6QNY0 202 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 SERPINA11Q86U17 422 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 KRTAP1-3Q8IUG1 177 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 MSRB3Q8IXL7 192 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 ZNF440Q8IYI8 595 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 C10orf111Q8N326 155 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 NFKBIDQ8NI38 313 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 PIGXQ8TBF5 258 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 PMM1Q92871 262 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 PIGTQ969N2 578 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 OR10A4Q9H209 315 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 RAD21L1Q9H4I0 556 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 GSX1Q9H4S2 264 aaPredicted RBP13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 ZNF232Q9UNY5 417 aa13.1□□□□□ -0.31
UBE2D3-228ENST00000508974 MTORP42345 2549 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 NF1P21359 2839 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 FAAHO00519 579 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 RAD51DO75771 328 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 ROS1P08922 2347 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 NTF4P34130 210 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 IDUAP35475 653 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 CLK1P49759 484 aaKnown RBP13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 RIPPLY3P57055 190 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 COPZ1P61923 177 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 SLC35A1P78382 337 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 CEACAM7Q14002 265 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 OR7A5Q15622 319 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 RNF220Q5VTB9 566 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 C9orf135Q5VTT2 229 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 CASP12Q6UXS9 341 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 C20orf204Q6ZNR8 217 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 CKAP2Q8WWK9 683 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 HSD17B8Q92506 261 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 AKAP1Q92667 903 aaKnown RBP eCLIP13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 NEUROG1Q92886 237 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 APH1AQ96BI3 265 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 SPATA9Q9BWV2 254 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 POTEKPQ9BYX7 375 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 NPHS2Q9NP85 383 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 A4GALTQ9NPC4 353 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 THUMPD1Q9NXG2 353 aaKnown RBP13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 DCTN4Q9UJW0 460 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 CHST2Q9Y4C5 530 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 C2CD3Q4AC94 2353 aa13.09□□□□□ -0.31
UBE2D3-228ENST00000508974 IGKV3D-15A0A087WSY6 115 aa13.08□□□□□ -0.32
UBE2D3-228ENST00000508974 A0A1W2PR80 420 aa13.08□□□□□ -0.32
UBE2D3-228ENST00000508974 CCT8L1PA6NM43 557 aa13.08□□□□□ -0.32
UBE2D3-228ENST00000508974 ZNF208O43345 1280 aa13.08□□□□□ -0.32
UBE2D3-228ENST00000508974 MRPL33O75394 65 aaKnown RBP13.08□□□□□ -0.32
UBE2D3-228ENST00000508974 SASH3O75995 380 aa13.08□□□□□ -0.32
UBE2D3-228ENST00000508974 AKR7A3O95154 331 aa13.08□□□□□ -0.32
UBE2D3-228ENST00000508974 THBS1P07996 1170 aa13.08□□□□□ -0.32
UBE2D3-228ENST00000508974 H2AFXP16104 143 aaPredicted RBP13.08□□□□□ -0.32
UBE2D3-228ENST00000508974 FKBP2P26885 142 aaKnown RBP13.08□□□□□ -0.32
UBE2D3-228ENST00000508974 MRPL19P49406 292 aaKnown RBP13.08□□□□□ -0.32
UBE2D3-228ENST00000508974 BSPH1Q075Z2 132 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms