RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 A0A0G2JPF8 293 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 CDHR4A6H8M9 788 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 ZNF716A6NP11 495 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 HNRNPCL2B2RXH8 293 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 HNRNPCL3B7ZW38 293 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 CLIC1O00299 241 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 HS3ST1O14792 307 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 CLOCKO15516 846 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 EIF1BO60739 113 aaKnown RBP13.52□□□□□ -0.25
CHD3-205ENST00000449744 HNRNPCL1O60812 293 aaKnown RBP13.52□□□□□ -0.25
CHD3-205ENST00000449744 MRPL33O75394 65 aaKnown RBP13.52□□□□□ -0.25
CHD3-205ENST00000449744 CD3EP07766 207 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 GKN3PP0CG01 181 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 HNRNPCL4P0DMR1 293 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 CXCR1P25024 350 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 IDH3AP50213 366 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 MAPK11Q15759 364 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 TTMPQ5BVD1 217 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 RPS26P11Q5JNZ5 115 aaPredicted RBP13.52□□□□□ -0.25
CHD3-205ENST00000449744 FBXW9Q5XUX1 488 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 KRTAP1-3Q8IUG1 177 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 CADM2Q8N3J6 435 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 AKAP1Q92667 903 aaKnown RBP eCLIP13.52□□□□□ -0.25
CHD3-205ENST00000449744 MUCL1Q96DR8 90 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 PERPQ96FX8 193 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 POM121Q96HA1 1249 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 C18orf12Q96KH6 178 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 EBF4Q9BQW3 602 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 TMEM204Q9BSN7 226 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 CCDC28BQ9BUN5 200 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 PAIP1Q9H074 479 aaKnown RBP13.52□□□□□ -0.25
CHD3-205ENST00000449744 DLL4Q9NR61 685 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 PRDM4Q9UKN5 801 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 ZNF443Q9Y2A4 671 aaPredicted RBP13.52□□□□□ -0.25
CHD3-205ENST00000449744 IFT52Q9Y366 437 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 RNF115Q9Y4L5 304 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 PCDHB14Q9Y5E9 798 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 DSPPQ9NZW4 1301 aa13.52□□□□□ -0.25
CHD3-205ENST00000449744 FREM1Q5H8C1 2179 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 C5orf58C9J3I9 102 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 IGHV3-9P01782 118 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 THBS1P07996 1170 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 GGT1P19440 569 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 NCF2P19878 526 aaPredicted RBP13.51□□□□□ -0.25
CHD3-205ENST00000449744 IGHV1-2P23083 117 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 EDNRAP25101 427 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 ADSLP30566 484 aaPredicted RBP13.51□□□□□ -0.25
CHD3-205ENST00000449744 MRPL19P49406 292 aaKnown RBP13.51□□□□□ -0.25
CHD3-205ENST00000449744 AQP5P55064 265 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 FADDQ13158 208 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 RGNQ15493 299 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 NCMAPQ5T1S8 102 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 RNF220Q5VTB9 566 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 WBP2NLQ6ICG8 309 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 SSX8Q7RTT4 187 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 HDXQ7Z353 690 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 CCDC103Q8IW40 242 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 ZNF611Q8N823 705 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 SPATA9Q9BWV2 254 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 ADAM19Q9H013 955 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 CXorf56Q9H5V9 222 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 INTS9Q9NV88 658 aaKnown RBP13.51□□□□□ -0.25
CHD3-205ENST00000449744 ARGLU1Q9NWB6 273 aaPredicted RBP13.51□□□□□ -0.25
CHD3-205ENST00000449744 CCDC167Q9P0B6 97 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 DSCAMO60469 2012 aa13.51□□□□□ -0.25
CHD3-205ENST00000449744 A0A096LPI6 279 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 CIB4A0PJX0 185 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 CCT8L1PA6NM43 557 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 NR5A2O00482 541 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 TMCC2O75069 709 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 NUDT7P0C024 238 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 IMPDH2P12268 514 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 COX5AP20674 150 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 IDUAP35475 653 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 SLC16A1P53985 500 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 PPA1Q15181 289 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 ZNF311Q5JNZ3 666 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 TIMM23BQ5SRD1 257 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 BLOC1S3Q6QNY0 202 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 PRSS57Q6UWY2 283 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 YTHDF3Q7Z739 585 aaKnown RBP13.5□□□□□ -0.25
CHD3-205ENST00000449744 BIVMQ86UB2 503 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 P2RY8Q86VZ1 359 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 CLIP4Q8N3C7 705 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 BBS10Q8TAM1 723 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 SPDL1Q96EA4 605 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 TAPBPLQ9BX59 468 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 GSX1Q9H4S2 264 aaPredicted RBP13.5□□□□□ -0.25
CHD3-205ENST00000449744 A4GALTQ9NPC4 353 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 PARPBPQ9NWS1 579 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 ASB6Q9NWX5 421 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 SLC9A8Q9Y2E8 581 aa13.5□□□□□ -0.25
CHD3-205ENST00000449744 RAI1Q7Z5J4 1906 aaPredicted RBP13.49□□□□□ -0.25
CHD3-205ENST00000449744 ZC3H12DA2A288 527 aaKnown RBP13.49□□□□□ -0.25
CHD3-205ENST00000449744 HMGB1P1B2RPK0 211 aaPredicted RBP13.49□□□□□ -0.25
CHD3-205ENST00000449744 RAMP1O60894 148 aa13.49□□□□□ -0.25
CHD3-205ENST00000449744 RAD51DO75771 328 aa13.49□□□□□ -0.25
CHD3-205ENST00000449744 GPIP06744 558 aa13.49□□□□□ -0.25
CHD3-205ENST00000449744 INHBBP09529 407 aa13.49□□□□□ -0.25
CHD3-205ENST00000449744 PPIBP23284 216 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms