RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 RASD1Q9Y272 281 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 MRPS7Q9Y2R9 242 aaKnown RBP7.73□□□□□ -1.17
HMGB1-203ENST00000341423 HDAC3O15379 428 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 FABP1P07148 127 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 FAM174BQ3ZCQ3 159 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 AP1ARQ63HQ0 302 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 MAMSTRQ6ZN01 415 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 FOXRED2Q8IWF2 684 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 LMNTD1Q8N9Z9 388 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 CDC42EP4Q9H3Q1 356 aaKnown RBP7.73□□□□□ -1.17
HMGB1-203ENST00000341423 POPDC3Q9HBV1 291 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 TINAGQ9UJW2 476 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 TNS1Q9HBL0 1735 aaKnown RBP7.73□□□□□ -1.17
HMGB1-203ENST00000341423 FAM172BPA6NC97 362 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 A8MVM7 634 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 XRCC2O43543 280 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 LCMT2O60294 686 aaKnown RBP7.72□□□□□ -1.17
HMGB1-203ENST00000341423 LYZL6O75951 148 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 CH25HO95992 272 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 CD33P20138 364 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 SRD5A2P31213 254 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 CAV3P56539 151 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 BAMBIQ13145 260 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 PDCD1Q15116 288 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 ADRM1Q16186 407 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 RAB41Q5JT25 222 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 ATP1A1-AS1Q5TC04 95 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 PLEKHG7Q6ZR37 379 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 MOB3CQ70IA8 216 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 CPSF7Q8N684 471 aaKnown RBP7.72□□□□□ -1.17
HMGB1-203ENST00000341423 LYRM4Q9HD34 91 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 FOXJ2Q9P0K8 574 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 ASCC3Q8N3C0 2202 aaKnown RBP7.72□□□□□ -1.17
HMGB1-203ENST00000341423 PLCE1Q9P212 2302 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 ZCWPW2A0A1B0GU75 182 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 DAPL1A0PJW8 107 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 EI24O14681 340 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 ADAM20O43506 726 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 ANGPTL7O43827 346 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 TSPAN9O75954 239 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 GADD45GO95257 159 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 SCG5P05408 212 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 MAGEA5P43359 124 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 MRPL28Q13084 256 aaKnown RBP7.72□□□□□ -1.17
HMGB1-203ENST00000341423 P2RY6Q15077 328 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 ZCWPW2Q504Y3 356 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 ZNF473Q8WTR7 871 aaKnown RBP7.72□□□□□ -1.17
HMGB1-203ENST00000341423 PSD2Q9BQI7 771 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 CENPOQ9BU64 300 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 CACNG6Q9BXT2 260 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 RNF11Q9Y3C5 154 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 TRAV38-1A0A0B4J264 116 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 TNFRSF11BO00300 401 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 FADS2O95864 444 aaKnown RBP7.72□□□□□ -1.17
HMGB1-203ENST00000341423 SERPINA5P05154 406 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 ADH4P08319 380 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 CISD3P0C7P0 127 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 OR8G3PP0DMU2 310 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 ATF4P18848 351 aaPredicted RBP7.72□□□□□ -1.17
HMGB1-203ENST00000341423 AOAHP28039 575 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 SNCAP37840 140 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 SLC9A3P48764 834 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 RNF144AP50876 292 aaPredicted RBP7.72□□□□□ -1.17
HMGB1-203ENST00000341423 RAB2AP61019 212 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 COX10Q12887 443 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 EIF2B1Q14232 305 aaKnown RBP7.72□□□□□ -1.17
HMGB1-203ENST00000341423 C3AR1Q16581 482 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 KRT74Q7RTS7 529 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 ADCK1Q86TW2 530 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 ERMAPQ96PL5 475 aaPredicted RBP7.72□□□□□ -1.17
HMGB1-203ENST00000341423 BOCQ9BWV1 1114 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 BEX1Q9HBH7 125 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 MMP25Q9NPA2 562 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 CLEC4EQ9ULY5 219 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 POLDIP2Q9Y2S7 368 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 RPL36Q9Y3U8 105 aaKnown RBP7.72□□□□□ -1.17
HMGB1-203ENST00000341423 GXYLT2A0PJZ3 443 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 ZNF728P0DKX0 622 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 SEC24CP53992 1094 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 CEACAM7Q14002 265 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 TYSND1Q2T9J0 566 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 PLA1AQ53H76 456 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 REEP3Q6NUK4 255 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 C4orf32Q8N8J7 132 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 SUMF1Q8NBK3 374 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 MINDY2Q8NBR6 621 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 OLIG1Q8TAK6 271 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 WFDC5Q8TCV5 224 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 SLC44A1Q8WWI5 657 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 PSMF1Q92530 271 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 TNFRSF25Q93038 417 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 PPIL1Q9Y3C6 166 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 MSTNO14793 375 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 UGT2B11O75310 529 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 HTR1AP08908 422 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 FGF5P12034 268 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 CD22P20273 847 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 RIPPLY3P57055 190 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 TPRG1LQ5T0D9 272 aa7.72□□□□□ -1.17
HMGB1-203ENST00000341423 PLAG1Q6DJT9 500 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms