RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 POFUT2Q9Y2G5 429 aa13.29□□□□□ -0.28
VRK3-212ENST00000596814 CSAG2Q9Y5P2 127 aa13.29□□□□□ -0.28
VRK3-212ENST00000596814 TNRC6AQ8NDV7 1962 aaKnown RBP13.29□□□□□ -0.28
VRK3-212ENST00000596814 CFAP47Q6ZTR5 3102 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 IGKV1D-42A0A075B6H8 117 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 TMED7-TICAM2A0A0A6YYA0 188 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 C7orf72A4D263 438 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 MKRN2OSH3BPM6 223 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 KLRC4-KLRK1H3BQV0 150 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 IFI30P13284 250 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 CDH2P19022 906 aaPredicted RBP13.28□□□□□ -0.28
VRK3-212ENST00000596814 TCEA1P23193 301 aaKnown RBP13.28□□□□□ -0.28
VRK3-212ENST00000596814 SRD5A2P31213 254 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 APOBEC1P41238 236 aaKnown RBP13.28□□□□□ -0.28
VRK3-212ENST00000596814 EIF1P41567 113 aaKnown RBP13.28□□□□□ -0.28
VRK3-212ENST00000596814 OMPP47874 163 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 HSPA13P48723 471 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 MEOX1P50221 254 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 CXADRP78310 365 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 CRYZQ08257 329 aaKnown RBP13.28□□□□□ -0.28
VRK3-212ENST00000596814 RFX4Q33E94 735 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 PRICKLE2Q7Z3G6 844 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 GALNT5Q7Z7M9 940 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 P3H2Q8IVL5 708 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 GNPDA2Q8TDQ7 276 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 NPAS1Q99742 590 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 SLC19A3Q9BZV2 496 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 MEPEQ9NQ76 525 aaPredicted RBP13.28□□□□□ -0.28
VRK3-212ENST00000596814 B4GALT7Q9UBV7 327 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 TMED7Q9Y3B3 224 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 DMXL2Q8TDJ6 3036 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 LOC400499M0QZD8 3231 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 ANKRD11Q6UB99 2663 aaPredicted RBP13.28□□□□□ -0.28
VRK3-212ENST00000596814 NCKAP5O14513 1909 aa13.28□□□□□ -0.28
VRK3-212ENST00000596814 TRAV17A0A0B4J275 112 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 ENO4A6NNW6 628 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 SHISA8B8ZZ34 492 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 DLGAP1O14490 977 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 SUSD5O60279 629 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 MITFO75030 526 aaPredicted RBP13.27□□□□□ -0.28
VRK3-212ENST00000596814 WISP1O95388 367 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 SNAP29O95721 258 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 HK1P19367 917 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 CCNA2P20248 432 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 GPR4P46093 362 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 CTBP2P56545 445 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 ALDH6A1Q02252 535 aaKnown RBP13.27□□□□□ -0.28
VRK3-212ENST00000596814 PRKCDQ05655 676 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 TOMM20Q15388 145 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 TBR1Q16650 682 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 MEX3DQ86XN8 651 aaKnown RBP13.27□□□□□ -0.28
VRK3-212ENST00000596814 ADGRG3Q86Y34 549 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 ZADH2Q8N4Q0 377 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 POC1BQ8TC44 478 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 SNRNP27Q8WVK2 155 aaKnown RBP13.27□□□□□ -0.28
VRK3-212ENST00000596814 UBQLN3Q9H347 655 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 C20orf141Q9NUB4 165 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 CHRNA9Q9UGM1 479 aa13.27□□□□□ -0.28
VRK3-212ENST00000596814 TMEM72A0PK05 275 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 TMEM8BA6NDV4 472 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 FPR3P25089 353 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 GDF1P27539 372 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 ADH6P28332 368 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 CD97P48960 835 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 PLGLB1Q02325 96 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 TSPAN31Q12999 210 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 ZIK1Q3SY52 487 aaPredicted RBP13.27□□□□□ -0.29
VRK3-212ENST00000596814 KLHL17Q6TDP4 642 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 IGFL3Q6UXB1 125 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 CDK20Q8IZL9 346 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 GTPBP8Q8N3Z3 284 aaPredicted RBP13.27□□□□□ -0.29
VRK3-212ENST00000596814 BPIFA2Q96DR5 249 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 GPA33Q99795 319 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 TTTY12Q9BZ98 90 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 UCK2Q9BZX2 261 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 TOR3AQ9H497 397 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 ZNF703Q9H7S9 590 aaPredicted RBP13.27□□□□□ -0.29
VRK3-212ENST00000596814 ENOPH1Q9UHY7 261 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 RPH3AQ9Y2J0 694 aaPredicted RBP13.27□□□□□ -0.29
VRK3-212ENST00000596814 PCDHGB7Q9Y5F8 929 aa13.27□□□□□ -0.29
VRK3-212ENST00000596814 KLF4O43474 513 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 RFPL3SP0C7P2 107 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 ZNF17P17021 662 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 GSTM3P21266 225 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 RFC3P40938 356 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 GSSP48637 474 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 EGR4Q05215 589 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 COX10Q12887 443 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 RAET1LQ5VY80 246 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 PARP8Q8N3A8 854 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 OR5M1Q8NGP8 315 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 EXTL1Q92935 676 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 SGTBQ96EQ0 304 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 ADI1Q9BV57 179 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 RIBC2Q9H4K1 309 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 SERINC1Q9NRX5 453 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 SPIN1Q9Y657 262 aaPredicted RBP13.26□□□□□ -0.29
VRK3-212ENST00000596814 CHD8Q9HCK8 2581 aa13.26□□□□□ -0.29
VRK3-212ENST00000596814 A8MVM7 634 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 ZIC3O60481 467 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms