RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 PGDP52209 483 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 TRA2BP62995 288 aaKnown RBP13.4□□□□□ -0.26
VPS35-210ENST00000568784 DEFB115Q30KQ5 88 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 CD276Q5ZPR3 534 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 FAAH2Q6GMR7 532 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 TMEM64Q6YI46 380 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 TMPRSS12Q86WS5 348 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 CMTM4Q8IZR5 234 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 LINC00615Q96LM1 132 aaPredicted RBP13.4□□□□□ -0.26
VPS35-210ENST00000568784 MRPS18AQ9NVS2 196 aaKnown RBP13.4□□□□□ -0.26
VPS35-210ENST00000568784 PLXNB3Q9ULL4 1909 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 UBE2QL1A1L167 161 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 LGALS8O00214 317 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 CACNB4O00305 520 aaPredicted RBP13.4□□□□□ -0.26
VPS35-210ENST00000568784 PEX14O75381 377 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 SERPINA3P01011 423 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 OPCMLQ14982 345 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 OR2T4Q8NH00 348 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 ZNF296Q8WUU4 475 aaPredicted RBP13.4□□□□□ -0.26
VPS35-210ENST00000568784 HSD17B8Q92506 261 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 SFXN2Q96NB2 322 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 FOXN4Q96NZ1 517 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 NMNAT3Q96T66 252 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 GHITMQ9H3K2 345 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 ZNF346Q9UL40 294 aaKnown RBP13.4□□□□□ -0.26
VPS35-210ENST00000568784 SLC27A6Q9Y2P4 619 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 ALPK3Q96L96 1907 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 LOC100509620A0A075B734 347 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 A0A1W2PQU0 124 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 SELENOFO60613 162 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 IGHA1P01876 353 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 HLA-DQB1P01920 261 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 CPMP14384 443 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 ATXN7L3Q14CW9 347 aaPredicted RBP13.4□□□□□ -0.26
VPS35-210ENST00000568784 Q6ZTK2 550 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 OR52B4Q8NGK2 314 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 OR56B4Q8NH76 319 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 RERGQ96A58 199 aaPredicted RBP13.4□□□□□ -0.26
VPS35-210ENST00000568784 SLITRK2Q9H156 845 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 URB1O60287 2271 aaKnown RBP13.39□□□□□ -0.27
VPS35-210ENST00000568784 IMPA2O14732 288 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 TPOP07202 933 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 SLC6A6P31641 620 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 ARHGDIBP52566 201 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 ERVK-25P63136 954 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 COL28A1Q2UY09 1125 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 DEFB110Q30KQ9 67 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 FCAMRQ8WWV6 532 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 TSACCQ96A04 125 aaPredicted RBP13.39□□□□□ -0.27
VPS35-210ENST00000568784 KCTD12Q96CX2 325 aaKnown RBP13.39□□□□□ -0.27
VPS35-210ENST00000568784 ZNF436Q9C0F3 470 aaPredicted RBP13.39□□□□□ -0.27
VPS35-210ENST00000568784 IGFLR1Q9H665 355 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 NOX3Q9HBY0 568 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 SCP2D1Q9UJQ7 156 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 EXOGQ9Y2C4 368 aaKnown RBP13.39□□□□□ -0.27
VPS35-210ENST00000568784 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.39□□□□□ -0.27
VPS35-210ENST00000568784 ANXA2P2A6NMY6 339 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 KRT33AO76009 404 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 ANXA2P07355 339 aaKnown RBP13.39□□□□□ -0.27
VPS35-210ENST00000568784 FAM157BP0CG42 384 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 HPGDP15428 266 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 C4BPBP20851 252 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 HTR2AP28223 471 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 LRRC37A5PQ49AS3 106 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 TMEM31Q5JXX7 168 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 YOD1Q5VVQ6 348 aaPredicted RBP13.39□□□□□ -0.27
VPS35-210ENST00000568784 SLC22A10Q63ZE4 541 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 TMED4Q7Z7H5 227 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 PAWRQ96IZ0 340 aaKnown RBP13.39□□□□□ -0.27
VPS35-210ENST00000568784 TMEM168Q9H0V1 697 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 TSPAN10Q9H1Z9 355 aaPredicted RBP13.39□□□□□ -0.27
VPS35-210ENST00000568784 PRSS16Q9NQE7 514 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 DLL4Q9NR61 685 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 MYEF2Q9P2K5 600 aaKnown RBP13.39□□□□□ -0.27
VPS35-210ENST00000568784 EPXP11678 715 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 PSMB1P20618 241 aaKnown RBP13.39□□□□□ -0.27
VPS35-210ENST00000568784 LGALS3BPQ08380 585 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 SRSF5Q13243 272 aaKnown RBP13.39□□□□□ -0.27
VPS35-210ENST00000568784 GSG1Q2KHT4 349 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 TRILQ7L0X0 811 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 NLRC3Q7RTR2 1065 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 ZNF511Q8NB15 262 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 TMIEQ8NEW7 156 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 SCMH1Q96GD3 660 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 TSSK2Q96PF2 358 aa13.39□□□□□ -0.27
VPS35-210ENST00000568784 CNN2Q99439 309 aaKnown RBP13.39□□□□□ -0.27
VPS35-210ENST00000568784 XIRP2A4UGR9 3374 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 TVP23AA6NH52 213 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 ZNF879B4DU55 563 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 SEC14L5O43304 696 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 APOC3P02656 99 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 PTBP1P26599 531 aaKnown RBP eCLIP13.38□□□□□ -0.27
VPS35-210ENST00000568784 FRKP42685 505 aaPredicted RBP13.38□□□□□ -0.27
VPS35-210ENST00000568784 DPTQ07507 201 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 ARHGEF6Q15052 776 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 AANATQ16613 207 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 C4orf46Q504U0 113 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 PRRT3Q5FWE3 981 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 TPRA1Q86W33 373 aa13.38□□□□□ -0.27
VPS35-210ENST00000568784 MRPL43Q8N983 215 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms