RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ZNF623O75123 536 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 HLA-DOBP13765 273 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 OR5D16Q8NGK9 328 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 MRGPRX2Q96LB1 330 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 HYLS1Q96M11 299 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 MBOAT4Q96T53 435 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 TIMM29Q9BSF4 260 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 LIN7BQ9HAP6 207 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 TAAR2Q9P1P5 351 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 MYEF2Q9P2K5 600 aaKnown RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 SLC9B1P1A6NJY1 282 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 NOTOA8MTQ0 251 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 HIDE1A8MVS5 230 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 H3BNC9 293 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 SNAI1O95863 264 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 CERS1P27544 350 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 CRMP1Q14194 572 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 HNF4GQ14541 408 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 RTL8BQ17RB0 113 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 FAM199XQ6PEV8 388 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 WDR5BQ86VZ2 330 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 TMEM25Q86YD3 366 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 GDPD1Q8N9F7 314 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 SAT2Q96F10 170 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 SAMD8Q96LT4 415 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 MGLLQ99685 303 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 BARHL1Q9BZE3 327 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 PADI1Q9ULC6 663 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 A0A1B0GTW7 788 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 PMS2P1A4D2B8 440 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF701M0R085 212 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 SIGLEC6O43699 453 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 SMIM17P0DL12 118 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 PTPN6P29350 595 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 SIM1P81133 766 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 GALEQ14376 348 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 NADK2Q4G0N4 442 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 TECRLQ5HYJ1 363 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 RNLSQ5VYX0 342 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 PTCRAQ6ISU1 281 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 PGAP1Q75T13 922 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 GAREM2Q75VX8 874 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 NRMQ8IXM6 262 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 OR2A12Q8NGT7 310 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 SYNPRQ8TBG9 265 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 TMEM239Q8WW34 195 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 TMEM19Q96HH6 336 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 ADOQ96SZ5 270 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 VRTNQ9H8Y1 702 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 ASF1BQ9NVP2 202 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 ACTL7AQ9Y615 435 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 HOXD11P31277 338 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 RPS26P62854 115 aaKnown RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 SPOCK1Q08629 439 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 IKZF1Q13422 519 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 CAMK2BQ13554 666 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 HES5Q5TA89 166 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 DCAF12L1Q5VU92 463 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 SHISA6Q6ZSJ9 500 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 THOC3Q96J01 351 aaKnown RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 WDR83Q9BRX9 315 aaKnown RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 FGFBP2Q9BYJ0 223 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 RNF38Q9H0F5 515 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 TP63Q9H3D4 680 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 RIMS4Q9H426 269 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 PATZ1Q9HBE1 687 aaKnown RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 RIMS3Q9UJD0 308 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 ARHGEF17Q96PE2 2063 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 LAMA4Q16363 1823 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 TCRBV7S3A2A0A539 114 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 RDH16O75452 317 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 GJA5P36382 358 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 TAS2R19P59542 299 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 YOD1Q5VVQ6 348 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-204ENST00000423058 KCTD11Q693B1 232 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 SLC22A25Q6T423 547 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 CATSPERDQ86XM0 798 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 APCDD1Q8J025 514 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 FN3KRPQ9HA64 309 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 KCMF1Q9P0J7 381 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 IGKV6D-41A0A0C4DH26 115 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 DCDC2BA2VCK2 349 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 GAPDHSO14556 408 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-204ENST00000423058 TFP02787 698 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 CYB561P49447 251 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 MTCP1P56278 107 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 IRF4Q15306 451 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 HMGN3Q15651 99 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 TAF9Q16594 264 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 C4orf17Q53FE4 359 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 NPSR1Q6W5P4 371 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 DPPA4Q7L190 304 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 KDF1Q8NAX2 398 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-204ENST00000423058 SLC45A3Q96JT2 553 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 SLC12A9Q9BXP2 914 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 IKZF4Q9H2S9 585 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 EHFQ9NZC4 300 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 CACFD1Q9UGQ2 172 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 KCTD3Q9Y597 815 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 UNC13CQ8NB66 2214 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms