RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 FLRT2O43155 660 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 DNASE1P24855 282 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 SOX2P48431 317 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 SLC36A2Q495M3 483 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 LNX2Q8N448 690 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 OR2T35Q8NGX2 323 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 C4orf47A7E2U8 309 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 LEUTXA8MZ59 168 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 TEX46H3BTG2 121 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 PRICKLE3O43900 615 aaPredicted RBP11.2□□□□□ -0.62
CLIP3-201ENST00000360535 TRIM3O75382 744 aaPredicted RBP11.2□□□□□ -0.62
CLIP3-201ENST00000360535 HIST1H1CP16403 213 aaKnown RBP11.2□□□□□ -0.62
CLIP3-201ENST00000360535 HK1P19367 917 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 ENPP1P22413 925 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 EMDP50402 254 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 PPP2CBP62714 309 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 PPP2CAP67775 309 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 ZNF267Q14586 743 aaPredicted RBP11.2□□□□□ -0.62
CLIP3-201ENST00000360535 ALG10BQ5I7T1 473 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 PRAMEF8Q5VWM4 474 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 PRAMEF7Q5VXH5 474 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 HEPHL1Q6MZM0 1159 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 RNF44Q7L0R7 432 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 ZNF680Q8NEM1 530 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 OR8K3Q8NH51 312 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 BRIX1Q8TDN6 353 aaKnown RBP11.2□□□□□ -0.62
CLIP3-201ENST00000360535 NR4A3Q92570 626 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 YIPF5Q969M3 257 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 PLA2G2FQ9BZM2 168 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 PIGUQ9H490 435 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 IL23AQ9NPF7 189 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 DAPP1Q9UN19 280 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 RCE1Q9Y256 329 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 SLC35A3Q9Y2D2 325 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 A0A1B0GWA3 101 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 OR10H2O60403 315 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 SELENOFO60613 162 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 ADAM11O75078 769 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 GATBO75879 557 aaKnown RBP11.2□□□□□ -0.62
CLIP3-201ENST00000360535 HPXP02790 462 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 DBIP07108 87 aaKnown RBP11.2□□□□□ -0.62
CLIP3-201ENST00000360535 NID1P14543 1247 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 GDI1P31150 447 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 RPS21P63220 83 aaKnown RBP11.2□□□□□ -0.62
CLIP3-201ENST00000360535 HTRA4P83105 476 aaPredicted RBP11.2□□□□□ -0.62
CLIP3-201ENST00000360535 DUSP8Q13202 625 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 ERV3-1Q14264 604 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 ZNF425Q6IV72 752 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 CHMP1BQ7LBR1 199 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 UBE2Q1Q7Z7E8 422 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.2□□□□□ -0.62
CLIP3-201ENST00000360535 SLC38A6Q8IZM9 456 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 OR1E3Q8WZA6 343 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 MSANTD3Q96H12 275 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 RPP25Q9BUL9 199 aaKnown RBP11.2□□□□□ -0.62
CLIP3-201ENST00000360535 METTL17Q9H7H0 456 aaPredicted RBP11.2□□□□□ -0.62
CLIP3-201ENST00000360535 ZFP64Q9NPA5 681 aa11.2□□□□□ -0.62
CLIP3-201ENST00000360535 ZNF223Q9UK11 482 aaPredicted RBP11.2□□□□□ -0.62
CLIP3-201ENST00000360535 A0A0G2JK05 382 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 PRSS38A1L453 326 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 TRABD2BA6NFA1 517 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 J3QRE1 110 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 GMDSO60547 372 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 TFP02787 698 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 CCR4P51679 360 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 ACSM1Q08AH1 577 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 ZBTB37Q5TC79 503 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 SLC25A25Q6KCM7 469 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 PAQR7Q86WK9 346 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 GPALPP1Q8IXQ4 340 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 NMNAT3Q96T66 252 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 TIMM29Q9BSF4 260 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 CLEC4MQ9H2X3 399 aaPredicted RBP11.19□□□□□ -0.62
CLIP3-201ENST00000360535 NARFLQ9H6Q4 476 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 FKRPQ9H9S5 495 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 SLCO1C1Q9NYB5 712 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 ZNF224Q9NZL3 707 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 KCMF1Q9P0J7 381 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 SPEF1Q9Y4P9 236 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 LINC01553A4QN01 128 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 PLPP2O43688 288 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 KHDRBS3O75525 346 aaKnown RBP11.19□□□□□ -0.62
CLIP3-201ENST00000360535 NGFRP08138 427 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 ZNF250P15622 560 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 GDNFP39905 211 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 PGDP52209 483 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 PER3P56645 1201 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 POU6F2P78424 691 aaPredicted RBP11.19□□□□□ -0.62
CLIP3-201ENST00000360535 TOR2AQ5JU69 321 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 FIGLAQ6QHK4 219 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 OR2L13Q8N349 312 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 RPLP0P6Q8NHW5 317 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 ZNRF4Q8WWF5 429 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 PGLYRP3Q96LB9 341 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 TSSK2Q96PF2 358 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 OR2M4Q96R27 311 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 NKX3-1Q99801 234 aaPredicted RBP11.19□□□□□ -0.62
CLIP3-201ENST00000360535 GAL3ST1Q99999 423 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 C1QTNF6Q9BXI9 259 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 GHITMQ9H3K2 345 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms