RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 PGAM4Q8N0Y7 254 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 LILRA2Q8N149 483 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 CADM2Q8N3J6 435 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 OR10Q1Q8NGQ4 319 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 ZPLD1Q8TCW7 415 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 PHF10Q8WUB8 498 aaKnown RBP16.29■□□□□ 0.2
CLN3-239ENST00000628023 NSL1Q96IY1 281 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 DMRTA2Q96SC8 542 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 TUBA1CQ9BQE3 449 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 CHST2Q9Y4C5 530 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 FAM215AQ9Y5M1 114 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 CLCA1A8K7I4 914 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 H0YC42 278 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 TPST1O60507 370 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 ADAM11O75078 769 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 NTN1O95631 604 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 IFNA14P01570 189 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 IL11P20809 199 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 CALB2P22676 271 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 APOBEC1P41238 236 aaKnown RBP16.28■□□□□ 0.2
CLN3-239ENST00000628023 HTR3AP46098 478 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 EIF1AXP47813 144 aaKnown RBP16.28■□□□□ 0.2
CLN3-239ENST00000628023 GSK3BP49841 420 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 SUCLG1P53597 346 aaKnown RBP16.28■□□□□ 0.2
CLN3-239ENST00000628023 TPD52P55327 224 aaPredicted RBP16.28■□□□□ 0.2
CLN3-239ENST00000628023 NUP107P57740 925 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 RGS8P57771 180 aaPredicted RBP16.28■□□□□ 0.2
CLN3-239ENST00000628023 SLC25A3Q00325 362 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 SGCBQ16585 318 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 GLIPR1L2Q4G1C9 344 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 PDSS1Q5T2R2 415 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 RTL6Q6ICC9 239 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 C3orf33Q6P1S2 294 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 PLEKHM3Q6ZWE6 761 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 TRPM8Q7Z2W7 1104 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 LACC1Q8IV20 430 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 TNIP2Q8NFZ5 429 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 RASSF5Q8WWW0 418 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 RND1Q92730 232 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 SLC35B4Q969S0 331 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 TAMM41Q96BW9 452 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 ZNF524Q96C55 264 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 KLHL15Q96M94 604 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 TTYH2Q9BSA4 534 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 GMPR2Q9P2T1 348 aaKnown RBP16.28■□□□□ 0.2
CLN3-239ENST00000628023 ABCD2Q9UBJ2 740 aa16.28■□□□□ 0.2
CLN3-239ENST00000628023 SPIN1Q9Y657 262 aaPredicted RBP16.28■□□□□ 0.2
CLN3-239ENST00000628023 ETV2O00321 342 aaPredicted RBP16.27■□□□□ 0.2
CLN3-239ENST00000628023 FAAHO00519 579 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 TNFSF11O14788 317 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 GLI4P10075 376 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 PRG2P13727 222 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 SLC7A1P30825 629 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 ACAA2P42765 397 aaKnown RBP16.27■□□□□ 0.2
CLN3-239ENST00000628023 SLC1A3P43003 542 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 POLR2HP52434 150 aaKnown RBP16.27■□□□□ 0.2
CLN3-239ENST00000628023 HOXC5Q00444 222 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 NSUN5P2Q63ZY6 315 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 WBP2NLQ6ICG8 309 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 ESPNLQ6ZVH7 1005 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 CCDC80Q76M96 950 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 P4HA3Q7Z4N8 544 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 MARVELD2Q8N4S9 558 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 FIG4Q92562 907 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 CTPS2Q9NRF8 586 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 COQ3Q9NZJ6 369 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 RPS6KB2Q9UBS0 482 aa16.27■□□□□ 0.2
CLN3-239ENST00000628023 CD8B2A6NJW9 211 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 B2RBV5 119 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 SYT5O00445 386 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 GCM2O75603 506 aaPredicted RBP16.26■□□□□ 0.19
CLN3-239ENST00000628023 EPPINO95925 133 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 TFPIP10646 304 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 CCNA2P20248 432 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 TACR3P29371 465 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 CLDN15P56746 228 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 TMEM176BQ3YBM2 270 aaPredicted RBP16.26■□□□□ 0.19
CLN3-239ENST00000628023 HBMQ6B0K9 141 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 GGNQ86UU5 652 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 COMTD1Q86VU5 262 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 RANBP3LQ86VV4 465 aaPredicted RBP16.26■□□□□ 0.19
CLN3-239ENST00000628023 DEFB107AQ8IZN7 70 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 RNF148Q8N7C7 305 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 OR10D3Q8NH80 312 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 OR2V1Q8NHB1 315 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 SLC25A43Q8WUT9 341 aaPredicted RBP16.26■□□□□ 0.19
CLN3-239ENST00000628023 PROX1Q92786 737 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 EVA1AQ9H8M9 152 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 CALHM2Q9HA72 323 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 TMEM181Q9P2C4 612 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 CHRNA9Q9UGM1 479 aa16.26■□□□□ 0.19
CLN3-239ENST00000628023 NCOA6Q14686 2063 aaPredicted RBP16.25■□□□□ 0.19
CLN3-239ENST00000628023 TMED7-TICAM2A0A0A6YYA0 188 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 SLC22A20A6NK97 555 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 KDM4EB2RXH2 506 aaPredicted RBP16.25■□□□□ 0.19
CLN3-239ENST00000628023 CXCR6O00574 342 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 GMNNO75496 209 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 SYNGR4O95473 234 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 C8BP07358 591 aa16.25■□□□□ 0.19
CLN3-239ENST00000628023 SHC1P29353 583 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms