RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 TRMUO75648 421 aaKnown RBP16.82■□□□□ 0.28
USP39-201ENST00000323701 COPZ1P61923 177 aa16.82■□□□□ 0.28
USP39-201ENST00000323701 OR5M10Q6IEU7 315 aa16.82■□□□□ 0.28
USP39-201ENST00000323701 OR2Y1Q8NGV0 311 aa16.82■□□□□ 0.28
USP39-201ENST00000323701 WDR36Q8NI36 951 aaKnown RBP16.82■□□□□ 0.28
USP39-201ENST00000323701 OSTF1Q92882 214 aa16.82■□□□□ 0.28
USP39-201ENST00000323701 HS6ST2Q96MM7 605 aa16.82■□□□□ 0.28
USP39-201ENST00000323701 TNFRSF13CQ96RJ3 184 aa16.82■□□□□ 0.28
USP39-201ENST00000323701 TBL1XR1Q9BZK7 514 aa16.82■□□□□ 0.28
USP39-201ENST00000323701 STRADBQ9C0K7 418 aa16.82■□□□□ 0.28
USP39-201ENST00000323701 LAT2Q9GZY6 243 aa16.82■□□□□ 0.28
USP39-201ENST00000323701 FOXJ2Q9P0K8 574 aa16.82■□□□□ 0.28
USP39-201ENST00000323701 SH3D21A4FU49 640 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 C9J4A7 227 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 PPM1BO75688 479 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 OR2J2O76002 312 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 COX6A1P12074 109 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 RBM34P42696 430 aaKnown RBP16.81■□□□□ 0.28
USP39-201ENST00000323701 PGGHGQ32M88 737 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 GXYLT1Q4G148 440 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 WBP2NLQ6ICG8 309 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 ATG4DQ86TL0 474 aaPredicted RBP16.81■□□□□ 0.28
USP39-201ENST00000323701 ZNF440Q8IYI8 595 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 ALDH16A1Q8IZ83 802 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 PRSS33Q8NF86 280 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 BRIX1Q8TDN6 353 aaKnown RBP16.81■□□□□ 0.28
USP39-201ENST00000323701 ZNF582Q96NG8 517 aaPredicted RBP16.81■□□□□ 0.28
USP39-201ENST00000323701 TUBA1CQ9BQE3 449 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 SPRY4Q9C004 299 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 GALNT9Q9HCQ5 603 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 CCNB1IP1Q9NPC3 277 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 AKAP7Q9P0M2 348 aaPredicted RBP16.81■□□□□ 0.28
USP39-201ENST00000323701 MYOTQ9UBF9 498 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 C19orf25Q9UFG5 118 aaPredicted RBP16.81■□□□□ 0.28
USP39-201ENST00000323701 A0A1W2PQD3 144 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 ZNF99A8MXY4 864 aaPredicted RBP16.81■□□□□ 0.28
USP39-201ENST00000323701 EFCAB9A8MZ26 197 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 BHLHE40O14503 412 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 SURF4O15260 269 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 NRG3P56975 720 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 ZNF91Q05481 1191 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 OCLNQ16625 522 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 BTBD16Q32M84 506 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 LYPD8Q6UX82 237 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 TMEM163Q8TC26 289 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 ELP5Q8TE02 316 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 DUSP19Q8WTR2 217 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 DNAJA4Q8WW22 397 aaPredicted RBP16.81■□□□□ 0.28
USP39-201ENST00000323701 OIT3Q8WWZ8 545 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 MCCC2Q9HCC0 563 aa16.81■□□□□ 0.28
USP39-201ENST00000323701 KRCC1Q9NPI7 259 aaPredicted RBP16.81■□□□□ 0.28
USP39-201ENST00000323701 MT-CO3P00414 261 aa16.8■□□□□ 0.28
USP39-201ENST00000323701 JMJD7P0C870 316 aa16.8■□□□□ 0.28
USP39-201ENST00000323701 NR4A1P22736 598 aa16.8■□□□□ 0.28
USP39-201ENST00000323701 DCKP27707 260 aa16.8■□□□□ 0.28
USP39-201ENST00000323701 LCN1P31025 176 aa16.8■□□□□ 0.28
USP39-201ENST00000323701 E2F1Q01094 437 aa16.8■□□□□ 0.28
USP39-201ENST00000323701 EGR4Q05215 589 aa16.8■□□□□ 0.28
USP39-201ENST00000323701 SLC35F1Q5T1Q4 408 aa16.8■□□□□ 0.28
USP39-201ENST00000323701 MARCH9Q86YJ5 346 aa16.8■□□□□ 0.28
USP39-201ENST00000323701 CLDN22Q8N7P3 220 aa16.8■□□□□ 0.28
USP39-201ENST00000323701 BBS1Q8NFJ9 593 aa16.8■□□□□ 0.28
USP39-201ENST00000323701 HGDQ93099 445 aa16.8■□□□□ 0.28
USP39-201ENST00000323701 C12orf43Q96C57 262 aaKnown RBP16.8■□□□□ 0.28
USP39-201ENST00000323701 IMMP1LQ96LU5 166 aa16.8■□□□□ 0.28
USP39-201ENST00000323701 APOL3O95236 402 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 DLGAP3O95886 979 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 PTHP01270 115 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 DBTP11182 482 aaKnown RBP16.79■□□□□ 0.28
USP39-201ENST00000323701 RANBP1P43487 201 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 RAB15P59190 212 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 CSRP2Q16527 193 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 FCRLBQ6BAA4 426 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 SMARCD3Q6STE5 483 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 CDK20Q8IZL9 346 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 STX19Q8N4C7 294 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 OR2T33Q8NG76 320 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 OR11G2Q8NGC1 345 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 OR8K3Q8NH51 312 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 MYDGFQ969H8 173 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 DNAJA3Q96EY1 480 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 LIN37Q96GY3 246 aaPredicted RBP16.79■□□□□ 0.28
USP39-201ENST00000323701 TAAR9Q96RI9 348 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 CDC6Q99741 560 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 NPAS1Q99742 590 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 PADI1Q9ULC6 663 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 PCSK5Q92824 1860 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 CNOT1A5YKK6 2376 aaKnown RBP16.79■□□□□ 0.28
USP39-201ENST00000323701 FAM183AA6NL82 134 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 H3BMQ9 156 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 TNFRSF10AO00220 468 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 PLD2O14939 933 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 ZFAND5O76080 213 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 ATE1O95260 518 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 CCNA2P20248 432 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 ITPKBP27987 946 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 TACR3P29371 465 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 IRF3Q14653 427 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 SLC25A30Q5SVS4 291 aa16.79■□□□□ 0.28
USP39-201ENST00000323701 HES3Q5TGS1 186 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms