RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SLC25A38Q96DW6 304 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 LCORQ96JN0 433 aaPredicted RBP12.49□□□□□ -0.41
SKA3-201ENST00000298260 ENTPD4Q9Y227 616 aa12.49□□□□□ -0.41
SKA3-201ENST00000298260 FLRT2O43155 660 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 GAAP10253 952 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 NFYBP25208 207 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 MAT2AP31153 395 aaKnown RBP12.48□□□□□ -0.41
SKA3-201ENST00000298260 HOXC8P31273 242 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 LUMP51884 338 aaPredicted RBP12.48□□□□□ -0.41
SKA3-201ENST00000298260 SHC2P98077 582 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 ZNF311Q5JNZ3 666 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 PRAMEF13Q5VWM6 474 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 ZNF620Q6ZNG0 422 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 PXKQ7Z7A4 578 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.48□□□□□ -0.41
SKA3-201ENST00000298260 LRRC56Q8IYG6 542 aaPredicted RBP12.48□□□□□ -0.41
SKA3-201ENST00000298260 MUC20Q8N307 709 aaPredicted RBP12.48□□□□□ -0.41
SKA3-201ENST00000298260 PIGXQ8TBF5 258 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 SFT2D1Q8WV19 159 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 OR5P2Q8WZ92 322 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 KISS1RQ969F8 398 aaPredicted RBP12.48□□□□□ -0.41
SKA3-201ENST00000298260 NDC1Q9BTX1 674 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 TMEM185BQ9H7F4 350 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 DHCR7Q9UBM7 475 aaKnown RBP12.48□□□□□ -0.41
SKA3-201ENST00000298260 DYRK1BQ9Y463 629 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 CHD7Q9P2D1 2997 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 IDSB3KWA1 339 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 FCMRO60667 390 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 MT-ND5P03915 603 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 HMGN2P05204 90 aaKnown RBP12.48□□□□□ -0.41
SKA3-201ENST00000298260 CRYBA1P05813 215 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 PRG2P13727 222 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 RECQLP46063 649 aaPredicted RBP12.48□□□□□ -0.41
SKA3-201ENST00000298260 FXYD6P3P58550 94 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 SNRPEP62304 92 aaKnown RBP12.48□□□□□ -0.41
SKA3-201ENST00000298260 ZNF85Q03923 595 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 PAN3Q58A45 887 aaKnown RBP12.48□□□□□ -0.41
SKA3-201ENST00000298260 ZNF697Q5TEC3 545 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 CFAP206Q8IYR0 622 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 KCT2Q8NC54 265 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 OR2T33Q8NG76 320 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 OR1S2Q8NGQ3 325 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 PNPLA2Q96AD5 504 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 SPSB2Q99619 263 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 GPR174Q9BXC1 333 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 BARX1Q9HBU1 254 aaPredicted RBP12.48□□□□□ -0.41
SKA3-201ENST00000298260 GSN-AS1Q9NRJ2 163 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 ANKRD10Q9NXR5 420 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 TAS2R5Q9NYW4 299 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 IL20Q9NYY1 176 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 SPG21Q9NZD8 308 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 SCN2AQ99250 2005 aa12.48□□□□□ -0.41
SKA3-201ENST00000298260 PLPP2O43688 288 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 DUSP11O75319 330 aaKnown RBP12.47□□□□□ -0.41
SKA3-201ENST00000298260 IGSF6O95976 241 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 SERPINA3P01011 423 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 HOXB1P14653 301 aaPredicted RBP12.47□□□□□ -0.41
SKA3-201ENST00000298260 MPGP29372 298 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 ART1P52961 327 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 DUSP2Q05923 314 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 LMAN2Q12907 356 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 AKIRIN2Q53H80 203 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 TXNDC8Q6A555 127 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 FAM199XQ6PEV8 388 aaPredicted RBP12.47□□□□□ -0.41
SKA3-201ENST00000298260 THSD4Q6ZMP0 1018 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 NDUFAF7Q7L592 441 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 OR2AP1Q8NGE2 309 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 DIO2Q92813 273 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 GFI1Q99684 422 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 GLIPR2Q9H4G4 154 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 SUV39H2Q9H5I1 410 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 CWH43Q9H720 699 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 IL21RQ9HBE5 538 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 C20orf141Q9NUB4 165 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 NDRG3Q9UGV2 375 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 TINAGQ9UJW2 476 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 A0A0G2JPF8 293 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.47□□□□□ -0.41
SKA3-201ENST00000298260 OR6C76A6NM76 312 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 HNRNPCL3B7ZW38 293 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 PRICKLE3O43900 615 aaPredicted RBP12.47□□□□□ -0.41
SKA3-201ENST00000298260 KRT33AO76009 404 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 HNRNPCL4P0DMR1 293 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 PSMB5P28074 263 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 PPP2R1BP30154 601 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 CALCRP30988 508 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 STARP49675 285 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 TRAM2Q15035 370 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 HACD4Q5VWC8 232 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 TMEM220Q6QAJ8 160 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 MEPCEQ7L2J0 689 aaKnown RBP12.47□□□□□ -0.41
SKA3-201ENST00000298260 RAB11FIP2Q7L804 512 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 TPRA1Q86W33 373 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 CCDC36Q8IYA8 594 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 DCAF4L2Q8NA75 395 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 OR14A16Q8NHC5 309 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 PFN4Q8NHR9 129 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 C1orf216Q8TAB5 229 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 OSTF1Q92882 214 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 SYNDIG1Q9H7V2 258 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms