RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 YIF1BQ5BJH7 314 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 PIP5KL1Q5T9C9 394 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 PXDC1Q5TGL8 231 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 LRRC56Q8IYG6 542 aaPredicted RBP12.48□□□□□ -0.41
TCOF1-214ENST00000515035 DEFB126Q9BYW3 111 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 TGIF2Q9GZN2 237 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 CWH43Q9H720 699 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 SHPKQ9UHJ6 478 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 DNAJC25-GNG10A0A024R161 153 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 TMEM82A0PJX8 343 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 CD300LBA8K4G0 201 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 PEX12O00623 359 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 CNMDO75829 334 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 STK17BO94768 372 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 ALX3O95076 343 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 MC3RP41968 323 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 SLC6A19Q695T7 634 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 MEPCEQ7L2J0 689 aaKnown RBP12.48□□□□□ -0.41
TCOF1-214ENST00000515035 DNAAF1Q8NEP3 725 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 NMNAT2Q9BZQ4 307 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 SLCO3A1Q9UIG8 710 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 NUP188Q5SRE5 1749 aa12.48□□□□□ -0.41
TCOF1-214ENST00000515035 SMLR1H3BR10 107 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 HMGN2P05204 90 aaKnown RBP12.47□□□□□ -0.41
TCOF1-214ENST00000515035 RAB28P51157 221 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 ACY1Q03154 408 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 GAB1Q13480 694 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 VASNQ6EMK4 673 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 CLDN22Q8N7P3 220 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 PXT1Q8NFP0 134 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 OR51Q1Q8NH59 317 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 RAB7BQ96AH8 199 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 BPIFA2Q96DR5 249 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 SLC2A11Q9BYW1 496 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 SLC19A3Q9BZV2 496 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 RLIMQ9NVW2 624 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 PLEKHM1Q9Y4G2 1056 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 SLC22A23A1A5C7 686 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 ANKRD28O15084 1053 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 MSX1P28360 303 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 CRABP1P29762 137 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 PER3P56645 1201 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 HOXC5Q00444 222 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 COL9A2Q14055 689 aaPredicted RBP12.47□□□□□ -0.41
TCOF1-214ENST00000515035 PM20D1Q6GTS8 502 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 ZNF322Q6U7Q0 402 aaPredicted RBP12.47□□□□□ -0.41
TCOF1-214ENST00000515035 GAREM2Q75VX8 874 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 TMEM200AQ86VY9 491 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 ZNF808Q8N4W9 903 aaPredicted RBP12.47□□□□□ -0.41
TCOF1-214ENST00000515035 CDRT4Q8N9R6 151 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 SLC25A31Q9H0C2 315 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 NIT2Q9NQR4 276 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 SPHK2Q9NRA0 654 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 PSORS1C1Q9UIG5 152 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 hCG_1807616A0A1W2PRN6 198 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 GABRR3A8MPY1 467 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 ITGB2P05107 769 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 SNRPBP14678 240 aaKnown RBP12.47□□□□□ -0.41
TCOF1-214ENST00000515035 ECH1Q13011 328 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 HTR4Q13639 388 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 LEXMQ3ZCV2 418 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 KCNIP4Q6PIL6 250 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 OR6F1Q8NGZ6 308 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 OR4Q3Q8NH05 313 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 PKMYT1Q99640 499 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 CLMPQ9H6B4 373 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 TCRBP04435 133 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 NOVP48745 357 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 DLX2Q07687 328 aaPredicted RBP12.47□□□□□ -0.41
TCOF1-214ENST00000515035 GRM7Q14831 915 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 SLC9A3R2Q15599 337 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 PLK5Q496M5 336 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 CLVS2Q5SYC1 327 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 HBMQ6B0K9 141 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 ABHD5Q8WTS1 349 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 SLC7A6Q92536 515 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 SEC22AQ96IW7 307 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 INTS14Q96SY0 518 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 B3GNT2Q9NY97 397 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 HHLA2Q9UM44 414 aa12.47□□□□□ -0.41
TCOF1-214ENST00000515035 S100A11P31949 105 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 DDOSTP39656 456 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 KIAA1024LP59773 190 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 HMGN3Q15651 99 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 UBE2NLQ5JXB2 153 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 SLC51BQ86UW2 128 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 NLRP8Q86W28 1048 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 EGLN2Q96KS0 407 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 NAA11Q9BSU3 229 aaPredicted RBP12.46□□□□□ -0.41
TCOF1-214ENST00000515035 SYT11Q9BT88 431 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 PITHD1Q9GZP4 211 aaPredicted RBP12.46□□□□□ -0.41
TCOF1-214ENST00000515035 NKX2-4Q9H2Z4 354 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 FAM212BQ9NTI7 297 aaPredicted RBP12.46□□□□□ -0.41
TCOF1-214ENST00000515035 ADAM18Q9Y3Q7 739 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 MYH15Q9Y2K3 1946 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 SCN11AQ9UI33 1791 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 STC2O76061 302 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 LALBAP00709 142 aa12.46□□□□□ -0.41
TCOF1-214ENST00000515035 RPS25P62851 125 aaKnown RBP12.46□□□□□ -0.41
TCOF1-214ENST00000515035 ADARB1P78563 741 aaKnown RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms