RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 TRIM36Q9NQ86 728 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 KLK11Q9UBX7 282 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 GPR89AB7ZAQ6 455 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 C1QTNF3-AMACRE9PGA6 284 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 ATP6V1G2-DDX39BF2Z307 99 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 H3BUI4 141 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 SLC35G4P0C7Q5 338 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 GPR89BP0CG08 455 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 ATF1P18846 271 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 BLVRAP53004 296 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 SNRPNP63162 240 aaKnown RBP11.53□□□□□ -0.56
HDAC4-208ENST00000463007 SIM1P81133 766 aaPredicted RBP11.53□□□□□ -0.56
HDAC4-208ENST00000463007 GALEQ14376 348 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 AANATQ16613 207 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 CD200R1LQ6Q8B3 271 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 Q6ZTK2 550 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 RD3Q7Z3Z2 195 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 MS4A15Q8N5U1 240 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 POGLUT1Q8NBL1 392 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 OR52L1Q8NGH7 329 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 ELMOD3Q96FG2 381 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 OR14A2Q96R54 314 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 PLA2G2FQ9BZM2 168 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 FBXO34Q9NWN3 711 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 UBQLN2Q9UHD9 624 aa11.53□□□□□ -0.56
HDAC4-208ENST00000463007 CDHR4A6H8M9 788 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 KDM4EB2RXH2 506 aaPredicted RBP11.52□□□□□ -0.57
HDAC4-208ENST00000463007 ARPC1BO15143 372 aaKnown RBP11.52□□□□□ -0.57
HDAC4-208ENST00000463007 SOX30O94993 753 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 AIFM1O95831 613 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 CA3P07451 260 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 RAB3BP20337 219 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 BTN3A2P78410 334 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 EFNB1P98172 346 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 RTL4Q6ZR62 310 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 RASSF6Q6ZTQ3 369 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 LSMEM1Q8N8F7 131 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 ZNF485Q8NCK3 441 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 OR2T4Q8NH00 348 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 NXPE2Q96DL1 559 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 RBP7Q96R05 134 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 NDC1Q9BTX1 674 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 PRKAG2Q9UGJ0 569 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 ELF5Q9UKW6 265 aaPredicted RBP11.52□□□□□ -0.57
HDAC4-208ENST00000463007 MPDZO75970 2070 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 TCRBV16S1A1N1A0A5B0 115 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 MEIS3P1A6NDR6 274 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 GRXCR1A8MXD5 290 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 FMO6PO60774 539 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 ZIC2O95409 532 aaPredicted RBP11.52□□□□□ -0.57
HDAC4-208ENST00000463007 IFNA7P01567 189 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 HLA-DQB1P01920 261 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 NAT2P11245 290 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 LCN1P31025 176 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 HSD17B2P37059 387 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 HSF2Q03933 536 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 FZD5Q13467 585 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 SLC36A2Q495M3 483 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 TMEM255AQ5JRV8 349 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 ZNF620Q6ZNG0 422 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 OR8K3Q8NH51 312 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 DIO2Q92813 273 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 WDR45Q9Y484 360 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 CFAP54Q96N23 3096 aa11.52□□□□□ -0.57
HDAC4-208ENST00000463007 A0A087WV48 116 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 A0A1B0GVT2 93 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 TRABD2BA6NFA1 517 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 ACOD1A6NK06 481 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 IDSB3KWA1 339 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 LRRN3E7EW58 273 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 IMPA2O14732 288 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 PRICKLE3O43900 615 aaPredicted RBP11.51□□□□□ -0.57
HDAC4-208ENST00000463007 KHDRBS3O75525 346 aaKnown RBP11.51□□□□□ -0.57
HDAC4-208ENST00000463007 RPP14O95059 124 aaKnown RBP11.51□□□□□ -0.57
HDAC4-208ENST00000463007 PPP1R3DO95685 299 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 PAK4O96013 591 aaPredicted RBP11.51□□□□□ -0.57
HDAC4-208ENST00000463007 MAKP20794 623 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 HTR1FP30939 366 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 GPM6BQ13491 265 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 RUNX3Q13761 415 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 MLC1Q15049 377 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 FAM111BQ6SJ93 734 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 METAP1DQ6UB28 335 aaPredicted RBP11.51□□□□□ -0.57
HDAC4-208ENST00000463007 OR52B4Q8NGK2 314 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 ACOT11Q8WXI4 607 aaPredicted RBP11.51□□□□□ -0.57
HDAC4-208ENST00000463007 SUSD6Q92537 303 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 C1QTNF7Q9BXJ2 289 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 LRRN3Q9H3W5 708 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 CACYBPQ9HB71 228 aaKnown RBP11.51□□□□□ -0.57
HDAC4-208ENST00000463007 MGAT4CQ9UBM8 478 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 A0A0A6YYD5 115 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 A0A1W2PPL8 197 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 IRGMA1A4Y4 181 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 LRIT2A6NDA9 550 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 ZNF593O00488 134 aaPredicted RBP11.51□□□□□ -0.57
HDAC4-208ENST00000463007 PEX12O00623 359 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 TRIM3O75382 744 aaPredicted RBP11.51□□□□□ -0.57
HDAC4-208ENST00000463007 KDM4BO94953 1096 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 KAT7O95251 611 aa11.51□□□□□ -0.57
HDAC4-208ENST00000463007 TFP02787 698 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms