RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 BCL2A1Q16548 175 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 VMACQ2NL98 169 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 ZNF311Q5JNZ3 666 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 RTL6Q6ICC9 239 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 ARPINQ7Z6K5 226 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 ULK2Q8IYT8 1036 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 EID3Q8N140 333 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 RPRMLQ8N4K4 120 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 RNF145Q96MT1 663 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 ZNF583Q96ND8 569 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 DMRTA2Q96SC8 542 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 HOPXQ9BPY8 73 aaPredicted RBP14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 RSPO3Q9BXY4 272 aaPredicted RBP14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 CACYBPQ9HB71 228 aaKnown RBP14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 ARL8BQ9NVJ2 186 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 CMTM6Q9NX76 183 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 CAMK2AQ9UQM7 478 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 FAM215AQ9Y5M1 114 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 LRRK2Q5S007 2527 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 AHRRA9YTQ3 701 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 H3BML4 177 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 ETV2O00321 342 aaPredicted RBP14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 GCM2O75603 506 aaPredicted RBP14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 NTN1O95631 604 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 ESRRAP11474 423 aaPredicted RBP14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 PGCP20142 388 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 POU3F2P20265 443 aaPredicted RBP14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 RYKP34925 604 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 PCGF2P35227 344 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 EIF1P41567 113 aaKnown RBP14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 CPA2P48052 419 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 FOXF1Q12946 379 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 NCCRP1Q6ZVX7 275 aaPredicted RBP14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 KRT73Q86Y46 540 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 GRAMD2AQ8IUY3 354 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 SLC15A3Q8IY34 581 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 CLIP4Q8N3C7 705 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 MARVELD2Q8N4S9 558 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 FBXO27Q8NI29 283 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 CCDC120Q96HB5 630 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 REXO5Q96IC2 774 aaKnown RBP14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 ZNF607Q96SK3 696 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 TAGLN3Q9UI15 199 aa14.94□□□□□ -0.02
CCDC28A-202ENST00000611852 PCNX1Q96RV3 2341 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 WIPF3A6NGB9 483 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 CCT8L1PA6NM43 557 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 LDLRP01130 860 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 HOXD4P09016 255 aaPredicted RBP14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 PEPDP12955 493 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 ADH6P28332 368 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 PRKAR1BP31321 381 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 PTGER4P35408 488 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 SLC6A8P48029 635 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 SRYQ05066 204 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 ZSWIM7Q19AV6 140 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 SLC25A53Q5H9E4 307 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 MTFR2Q6P444 385 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 SLC30A8Q8IWU4 369 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 PHF10Q8WUB8 498 aaKnown RBP14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 ST8SIA1Q92185 356 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 MRGPRX4Q96LA9 322 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 SPATA5L1Q9BVQ7 753 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 ARMC7Q9H6L4 198 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 USP22Q9UPT9 525 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 AP4B1Q9Y6B7 739 aa14.93□□□□□ -0.02
CCDC28A-202ENST00000611852 AP3D1O14617 1153 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 SERPINB7O75635 380 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 RNF224P0DH78 156 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 ELK4P28324 431 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 SUCLG1P53597 346 aaKnown RBP14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 PER3P56645 1201 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 CLDN15P56746 228 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 CLDN20P56880 219 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 SESN3P58005 492 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 KRT72Q14CN4 511 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 ACSF3Q4G176 576 aaPredicted RBP14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 C1orf185Q5T7R7 199 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 ERICH5Q6P6B1 374 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 DHRS4L2Q6PKH6 230 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 B3GNT6Q6ZMB0 384 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 ZNF440Q8IYI8 595 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 ZPLD1Q8TCW7 415 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 TMEM234Q8WY98 164 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 TTYH2Q9BSA4 534 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 AP3M1Q9Y2T2 418 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 PHF3Q92576 2039 aaKnown RBP14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 PRORSD1PA6NEY8 169 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 CFAP73A6NFT4 308 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 FAM220BPB1ANY3 271 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 H0Y3Z8 333 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 H0YC42 278 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 M0QX08 132 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 FAAHO00519 579 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 NME4O00746 187 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 EFNA2O43921 213 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 TPST1O60507 370 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 ZG16O60844 167 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 MFN2O95140 757 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 GKN3PP0CG01 181 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms