RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 GPR119Q8TDV5 335 aa14.71□□□□□ -0.05
MSH5-SAPCD1-206ENST00000491552 WDR60Q8WVS4 1066 aa14.71□□□□□ -0.05
MSH5-SAPCD1-206ENST00000491552 ARSGQ96EG1 525 aa14.71□□□□□ -0.05
MSH5-SAPCD1-206ENST00000491552 RNF145Q96MT1 663 aa14.71□□□□□ -0.05
MSH5-SAPCD1-206ENST00000491552 TRIB1Q96RU8 372 aa14.71□□□□□ -0.05
MSH5-SAPCD1-206ENST00000491552 NPAS1Q99742 590 aa14.71□□□□□ -0.05
MSH5-SAPCD1-206ENST00000491552 TUBA1CQ9BQE3 449 aa14.71□□□□□ -0.05
MSH5-SAPCD1-206ENST00000491552 IKZF5Q9H5V7 419 aa14.71□□□□□ -0.05
MSH5-SAPCD1-206ENST00000491552 ARMCX1Q9P291 453 aa14.71□□□□□ -0.05
MSH5-SAPCD1-206ENST00000491552 AP4B1Q9Y6B7 739 aa14.71□□□□□ -0.05
MSH5-SAPCD1-206ENST00000491552 A0A0G2JPF8 293 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CLDN24A6NM45 220 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 KDM4EB2RXH2 506 aaPredicted RBP14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 HNRNPCL2B2RXH8 293 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 HNRNPCL3B7ZW38 293 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 C5orf58C9J3I9 102 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 HNRNPCL1O60812 293 aaKnown RBP14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 BCAS1O75363 584 aaPredicted RBP14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CLDN1O95832 211 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 HNRNPCL4P0DMR1 293 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ARAFP10398 606 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 IL7RP16871 459 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 GPX2P18283 190 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 EIF1P41567 113 aaKnown RBP14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 FOXF1Q12946 379 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 TRMT5Q32P41 509 aaKnown RBP14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 LIN52Q52LA3 116 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 COQ5Q5HYK3 327 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 RPS26P11Q5JNZ5 115 aaPredicted RBP14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 RIPPLY2Q5TAB7 128 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 PRAMEF8Q5VWM4 474 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 PRAMEF7Q5VXH5 474 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 NSUN5P2Q63ZY6 315 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 UBQLNLQ8IYU4 475 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 C10orf111Q8N326 155 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MEIOBQ8N635 442 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 OR10Q1Q8NGQ4 319 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 BBS10Q8TAM1 723 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 POC1BQ8TC44 478 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ASB5Q8WWX0 329 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SMPDL3BQ92485 455 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MAL2Q969L2 176 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SDCCAG3Q96C92 435 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ANKRD27Q96NW4 1050 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 TREX2Q9BQ50 279 aaPredicted RBP14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CACYBPQ9HB71 228 aaKnown RBP14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 STOML1Q9UBI4 398 aa14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 GPC6Q9Y625 555 aaPredicted RBP14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 NCOA6Q14686 2063 aaPredicted RBP14.7□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 USP9XQ93008 2570 aaPredicted RBP14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CD8B2A6NJW9 211 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MRASO14807 208 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SEC14L5O43304 696 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SNX3O60493 162 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 DNAJA2O60884 412 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 NID1P14543 1247 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 PGCP20142 388 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 PSMA4P25789 261 aaKnown RBP14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MTPNP58546 118 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 PLAURQ03405 335 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CYLC2Q14093 348 aaPredicted RBP14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CAPRIN1Q14444 709 aaKnown RBP14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 QPRTQ15274 297 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 TOMM34Q15785 309 aaPredicted RBP14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SEM1Q6ZVN7 128 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MAMDC2Q7Z304 686 aaPredicted RBP14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 METTL25Q8N6Q8 603 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 NFKBIDQ8NI38 313 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 THUMPD3Q9BV44 507 aaKnown RBP14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 TRIM8Q9BZR9 551 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 TMEM38AQ9H6F2 299 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CALHM2Q9HA72 323 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 BCL2L10Q9HD36 194 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 EXOSC3Q9NQT5 275 aaKnown RBP14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 PLEKHB1Q9UF11 243 aaPredicted RBP14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 RNF6Q9Y252 685 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 PHF3Q92576 2039 aaKnown RBP14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 PCNX3Q9H6A9 2034 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MYO7BQ6PIF6 2116 aa14.69□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 LOC100653049A0A140TA62 436 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CLCA1A8K7I4 914 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 KRT34O76011 436 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CLDN14O95500 239 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 PRKCAP17252 672 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ELK4P28324 431 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ADH6P28332 368 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CHRNB4P30926 498 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 TIMP3P35625 211 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SLC6A8P48029 635 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CLDN20P56880 219 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 EEFSECP57772 596 aaKnown RBP14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CDK6Q00534 326 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ART3Q13508 389 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SELPLGQ14242 412 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MRPL2Q5T653 305 aaKnown RBP14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CHMP1BQ7LBR1 199 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ADGRE4PQ86SQ3 457 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 VRK2Q86Y07 508 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CCDC71Q8IV32 467 aaPredicted RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms