RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 C11orf42Q8N5U0 333 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 BCORP1Q8N888 145 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 CCDC26Q8TAB7 109 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 FNDC8Q8TC99 324 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 DQX1Q8TE96 717 aaKnown RBP3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 STARD8Q92502 1023 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 ITFG2Q969R8 447 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 NT5C3BQ969T7 300 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 NRBF2Q96F24 287 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 ATP6V1G3Q96LB4 118 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 FAM210AQ96ND0 272 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 GAL3ST1Q99999 423 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 ALG12Q9BV10 488 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 HCAR1Q9BXC0 346 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 YTHDF1Q9BYJ9 559 aaKnown RBP3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 WDR76Q9H967 626 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 MIEF1Q9NQG6 463 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 EXOSC3Q9NQT5 275 aaKnown RBP3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 KLRF1Q9NZS2 232 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 GHRLQ9UBU3 117 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 Q9UF83 564 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 CHRNA9Q9UGM1 479 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 IL20RAQ9UHF4 553 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 KIAA1257Q9ULG3 409 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 KLF2Q9Y5W3 355 aaPredicted RBP3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 ADAMTS9Q9P2N4 1935 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 GRIN2DO15399 1336 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 ZMYM6O95789 1325 aa3.59□□□□□ -1.83
HMGB1P38-201ENST00000490557 PTCH1Q13635 1447 aa3.59□□□□□ -1.84
HMGB1P38-201ENST00000490557 A0A0U1RQS6 177 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 A0A1B0GUL7 405 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 HELTA6NFD8 242 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 ANKRD30BLA7E2S9 258 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 NDUFS8O00217 210 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 DNALI1O14645 258 aaPredicted RBP3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 SLC2A10O95528 541 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 IGFBP1P08833 259 aaPredicted RBP3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 RRASP10301 218 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 IGFBP5P24593 272 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 PTBP1P26599 531 aaKnown RBP eCLIP3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 BMI1P35226 326 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 LONP1P36776 959 aaKnown RBP3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 MAGEA1P43355 309 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 RGRP47804 291 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 ALDH3B2P48448 385 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 ERVPABLB-1P60509 514 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 DNAJC3Q13217 504 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 SRSF5Q13243 272 aaKnown RBP3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 IL18R1Q13478 541 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 KIAA0040Q15053 153 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 PAGE2BQ5JRK9 111 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 PHYHD1Q5SRE7 291 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 CCDC122Q5T0U0 273 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 SLX4IPQ5VYV7 408 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 ADGRD2Q7Z7M1 963 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 FAM228AQ86W67 206 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 APOBEC3FQ8IUX4 373 aaKnown RBP3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 NECAB1Q8N987 351 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 MINDY2Q8NBR6 621 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 OR8J1Q8NGP2 316 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 DNAJA4Q8WW22 397 aaPredicted RBP3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 C19orf60Q96EN9 201 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 B3GALT6Q96L58 329 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 SENP8Q96LD8 212 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 ZIM3Q96PE6 472 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 OPN3Q9H1Y3 402 aaPredicted RBP3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 COG4Q9H9E3 785 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 ELOVL2Q9NXB9 296 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 VNN3Q9NY84 501 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 COMMD3-BMI1R4GMX3 469 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 PLEKHG2Q9H7P9 1386 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 TNIKQ9UKE5 1360 aa3.58□□□□□ -1.84
HMGB1P38-201ENST00000490557 LOC100653049A0A140TA62 436 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 SPECC1L-ADORA2AF8WAN1 911 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 SLC17A2O00624 439 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 NVLO15381 856 aaKnown RBP3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 ABCC4O15439 1325 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 ZNF208O43345 1280 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 SF3B1O75533 1304 aaKnown RBP eCLIP3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 KRT34O76011 436 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 GIG44P09565 113 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 PAX7P23759 505 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 HTR2AP28223 471 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 CHI3L1P36222 383 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 OR1D4P47884 311 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 PRMT2P55345 433 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 EIF3EP60228 445 aaKnown RBP3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 NUCB2P80303 420 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 TRDNQ13061 729 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 SSX2Q16385 188 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 CAMK4Q16566 473 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 LRIT3Q3SXY7 679 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 DMKNQ6E0U4 476 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 PNCKQ6P2M8 343 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 ERASQ7Z444 233 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 PARGQ86W56 976 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 GRAMD2AQ8IUY3 354 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 UBE2J2Q8N2K1 259 aa3.57□□□□□ -1.84
HMGB1P38-201ENST00000490557 ARFGAP2Q8N6H7 521 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms