RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ZNF593O00488 134 aaPredicted RBP15.21■□□□□ 0.03
SDC4-201ENST00000372733 ANKRD34CP0C6C1 535 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 GKN3PP0CG01 181 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 ATF1P18846 271 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 P2RY2P41231 377 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 ELAVL3Q14576 367 aaKnown RBP15.21■□□□□ 0.03
SDC4-201ENST00000372733 COL28A1Q2UY09 1125 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 RFLNBQ8N5W9 214 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 CYB561A3Q8NBI2 242 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 OR13C2Q8NGS9 318 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 CEP76Q8TAP6 659 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 WFIKKN2Q8TEU8 576 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 DOK4Q8TEW6 326 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 PTP4A1Q93096 173 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 HGDQ93099 445 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 COL26A1Q96A83 441 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 PGLYRP3Q96LB9 341 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 APOBEC3BQ9UH17 382 aaKnown RBP15.21■□□□□ 0.03
SDC4-201ENST00000372733 WDR45Q9Y484 360 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 EDDM13A0A1B0GTR0 161 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 H2AFB2P0C5Z0 115 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 RAB3BP20337 219 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 DRD5P21918 477 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 DNASE1P24855 282 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 HTR2AP28223 471 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 TEAD1P28347 426 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 VASPP50552 380 aaPredicted RBP15.21■□□□□ 0.03
SDC4-201ENST00000372733 RAB28P51157 221 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 ERVK-21P61565 698 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 CRYZQ08257 329 aaKnown RBP15.21■□□□□ 0.03
SDC4-201ENST00000372733 SNTA1Q13424 505 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 CAMK2DQ13557 499 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 CAMK1Q14012 370 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 ACSM3Q53FZ2 586 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 GPR139Q6DWJ6 353 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 MFSD12Q6NUT3 480 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 PXKQ7Z7A4 578 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 TPRA1Q86W33 373 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 AUNIPQ9H7T9 357 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 ZNF223Q9UK11 482 aaPredicted RBP15.21■□□□□ 0.03
SDC4-201ENST00000372733 KCNK6Q9Y257 313 aa15.21■□□□□ 0.03
SDC4-201ENST00000372733 IGLON5A6NGN9 336 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 SSNA1O43805 119 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 TOXO94900 526 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 WNT1P04628 370 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 GYPBP06028 91 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 CEBPBP17676 345 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 PRKACBP22694 351 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 SNRPNP63162 240 aaKnown RBP15.2■□□□□ 0.02
SDC4-201ENST00000372733 ZNF85Q03923 595 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 CDONQ4KMG0 1287 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 PLPP4Q5VZY2 271 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 SSX6Q7RTT6 188 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 PRSS45Q7RTY3 260 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 RAB42Q8N4Z0 105 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 ADAMTS14Q8WXS8 1223 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 OTUB2Q96DC9 234 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 PEX11GQ96HA9 241 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 HS6ST2Q96MM7 605 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 CD180Q99467 661 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 IFT27Q9BW83 186 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 GSDMCQ9BYG8 508 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 FN3KQ9H479 309 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 DLL4Q9NR61 685 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 NKIRAS2Q9NYR9 191 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 ZNF780BQ9Y6R6 833 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 MEIKINA0A087WXM9 373 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 OR52A4PA6NMU1 304 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 PRR23D1E9PI22 279 aaPredicted RBP15.2■□□□□ 0.02
SDC4-201ENST00000372733 SLC9A3R1O14745 358 aaPredicted RBP15.2■□□□□ 0.02
SDC4-201ENST00000372733 MAGEB4O15481 346 aaPredicted RBP15.2■□□□□ 0.02
SDC4-201ENST00000372733 SC5DO75845 299 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 UBL3O95164 117 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 CFDP00746 253 aaPredicted RBP15.2■□□□□ 0.02
SDC4-201ENST00000372733 PRR23D2P0DMB1 279 aaPredicted RBP15.2■□□□□ 0.02
SDC4-201ENST00000372733 SULT1A3P0DMM9 295 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 SULT1A4P0DMN0 295 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 PYCR1P32322 319 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 ARFIP1P53367 373 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 ERVFC1P60507 584 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 ZP1P60852 638 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 HSF2Q03933 536 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 GPR68Q15743 365 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 HEPHL1Q6MZM0 1159 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 TEAD3Q99594 435 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 ADGRL4Q9HBW9 690 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 KRCC1Q9NPI7 259 aaPredicted RBP15.2■□□□□ 0.02
SDC4-201ENST00000372733 PTTG3PQ9NZH4 202 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 NUP50Q9UKX7 468 aa15.2■□□□□ 0.02
SDC4-201ENST00000372733 MDC1Q14676 2089 aaKnown RBP15.19■□□□□ 0.02
SDC4-201ENST00000372733 CARNS1A5YM72 827 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 SBK2P0C263 348 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 BMP7P18075 431 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 MAPK14Q16539 360 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 HACD4Q5VWC8 232 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 GET4Q7L5D6 327 aaPredicted RBP15.19■□□□□ 0.02
SDC4-201ENST00000372733 LNX2Q8N448 690 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 SLAIN1Q8ND83 568 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 GHSRQ92847 366 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 MSANTD3Q96H12 275 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms