RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 TRIP10Q15642 601 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 PFKFB4Q16877 469 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 TTC19Q6DKK2 380 aaPredicted RBP12.72□□□□□ -0.37
CLN3-249ENST00000636685 USP43Q70EL4 1123 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 SLC46A3Q7Z3Q1 461 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 GRK7Q8WTQ7 553 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 LRRC39Q96DD0 335 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 SH3YL1Q96HL8 342 aaPredicted RBP12.72□□□□□ -0.37
CLN3-249ENST00000636685 ZNF300Q96RE9 604 aaPredicted RBP12.72□□□□□ -0.37
CLN3-249ENST00000636685 COQ10BQ9H8M1 238 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 FKRPQ9H9S5 495 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 NMRAL1Q9HBL8 299 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 SENP1Q9P0U3 644 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 NTMQ9P121 344 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 WNK1Q9H4A3 2382 aa12.72□□□□□ -0.37
CLN3-249ENST00000636685 CIB4A0PJX0 185 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 GXYLT2A0PJZ3 443 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 OR7A17O14581 309 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 RGS14O43566 566 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 IGHV3-9P01782 118 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 GFAPP14136 432 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 GIFP27352 417 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 LIMS1P48059 325 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 SNRPD2P62316 118 aaKnown RBP12.71□□□□□ -0.37
CLN3-249ENST00000636685 SCGB2A2Q13296 93 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 TMEM176BQ3YBM2 270 aaPredicted RBP12.71□□□□□ -0.37
CLN3-249ENST00000636685 TCHHL1Q5QJ38 904 aaPredicted RBP12.71□□□□□ -0.37
CLN3-249ENST00000636685 FAM219BQ5XKK7 198 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 SHQ1Q6PI26 577 aaKnown RBP12.71□□□□□ -0.37
CLN3-249ENST00000636685 CMC1Q7Z7K0 106 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 ZNF100Q8IYN0 542 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 FAM9CQ8IZT9 166 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 SLC43A2Q8N370 569 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 FBXO36Q8NEA4 188 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.71□□□□□ -0.37
CLN3-249ENST00000636685 MRPL24Q96A35 216 aaKnown RBP12.71□□□□□ -0.37
CLN3-249ENST00000636685 NOL11Q9H8H0 719 aaKnown RBP12.71□□□□□ -0.37
CLN3-249ENST00000636685 Q9N2J8 555 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 FARSBQ9NSD9 589 aaKnown RBP12.71□□□□□ -0.37
CLN3-249ENST00000636685 KLHL9Q9P2J3 617 aa12.71□□□□□ -0.37
CLN3-249ENST00000636685 CCT8L1PA6NM43 557 aa12.7□□□□□ -0.38
CLN3-249ENST00000636685 COQ9O75208 318 aa12.7□□□□□ -0.38
CLN3-249ENST00000636685 SNUPNO95149 360 aaKnown RBP12.7□□□□□ -0.38
CLN3-249ENST00000636685 IL3P08700 152 aa12.7□□□□□ -0.38
CLN3-249ENST00000636685 IVDP26440 423 aa12.7□□□□□ -0.38
CLN3-249ENST00000636685 FOXF1Q12946 379 aa12.7□□□□□ -0.38
CLN3-249ENST00000636685 GLCCI1Q86VQ1 547 aa12.7□□□□□ -0.38
CLN3-249ENST00000636685 C1orf52Q8N6N3 182 aaKnown RBP12.7□□□□□ -0.38
CLN3-249ENST00000636685 ATP6V1C2Q8NEY4 427 aa12.7□□□□□ -0.38
CLN3-249ENST00000636685 ACTRT2Q8TDY3 377 aa12.7□□□□□ -0.38
CLN3-249ENST00000636685 ZNF75CPQ92670 426 aaPredicted RBP12.7□□□□□ -0.38
CLN3-249ENST00000636685 ATP6V1E2Q96A05 226 aa12.7□□□□□ -0.38
CLN3-249ENST00000636685 JMJD8Q96S16 334 aa12.7□□□□□ -0.38
CLN3-249ENST00000636685 RBBP8Q99708 897 aa12.7□□□□□ -0.38
CLN3-249ENST00000636685 LZTFL1Q9NQ48 299 aa12.7□□□□□ -0.38
CLN3-249ENST00000636685 MRTO4Q9UKD2 239 aaKnown RBP12.7□□□□□ -0.38
CLN3-249ENST00000636685 SPEF1Q9Y4P9 236 aa12.7□□□□□ -0.38
CLN3-249ENST00000636685 GOLGA6L10A0A0M3HER8 536 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 ALG1L2C9J202 215 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 OXSR1O95747 527 aaPredicted RBP12.69□□□□□ -0.38
CLN3-249ENST00000636685 LINGO3P0C6S8 592 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 ARAFP10398 606 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 DAOP14920 347 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 PGCP20142 388 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 EPHA1P21709 976 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 CDC25BP30305 580 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 FNTAP49354 379 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 ALDH18A1P54886 795 aaKnown RBP12.69□□□□□ -0.38
CLN3-249ENST00000636685 PSMD4P55036 377 aaKnown RBP12.69□□□□□ -0.38
CLN3-249ENST00000636685 FOXG1P55316 489 aaPredicted RBP12.69□□□□□ -0.38
CLN3-249ENST00000636685 TRA2BP62995 288 aaKnown RBP12.69□□□□□ -0.38
CLN3-249ENST00000636685 RASGEF1BQ0VAM2 473 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 IFT88Q13099 833 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 RAPH1Q70E73 1250 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 UBE2J2Q8N2K1 259 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 WDR31Q8NA23 367 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 OR4C3Q8NH37 302 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 ESM1Q9NQ30 184 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 SLC35C2Q9NQQ7 365 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 GIMAP4Q9NUV9 329 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 HIF1ANQ9NWT6 349 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 USP22Q9UPT9 525 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 MOKQ9UQ07 419 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 WNK2Q9Y3S1 2297 aa12.69□□□□□ -0.38
CLN3-249ENST00000636685 A0A1W2PNR3 127 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 SYCE1LA8MT33 242 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 B4DSR2 109 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 ZNF195O14628 629 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 GABRA3P34903 492 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 PRIM2P49643 509 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 CCNG1P51959 295 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 ARL4CP56559 192 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 ILF2Q12905 390 aaKnown RBP12.68□□□□□ -0.38
CLN3-249ENST00000636685 PDIA2Q13087 525 aaKnown RBP12.68□□□□□ -0.38
CLN3-249ENST00000636685 FBXW9Q5XUX1 488 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 TMEM107Q6UX40 140 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 GALNT5Q7Z7M9 940 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 SAMD14Q8IZD0 417 aaPredicted RBP12.68□□□□□ -0.38
CLN3-249ENST00000636685 NUP43Q8NFH3 380 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 TOR1AIP2Q8NFQ8 470 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms