RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 SNX1Q13596 522 aa4□□□□□ -1.77
SNCA-213ENST00000618500 GGTLC2Q14390 218 aa4□□□□□ -1.77
SNCA-213ENST00000618500 ZNHIT3Q15649 155 aaPredicted RBP4□□□□□ -1.77
SNCA-213ENST00000618500 FBXW9Q5XUX1 488 aa4□□□□□ -1.77
SNCA-213ENST00000618500 TMEM139Q8IV31 216 aa4□□□□□ -1.77
SNCA-213ENST00000618500 WDR31Q8NA23 367 aa4□□□□□ -1.77
SNCA-213ENST00000618500 PUM2Q8TB72 1066 aaKnown RBP eCLIP4□□□□□ -1.77
SNCA-213ENST00000618500 RDH11Q8TC12 318 aa4□□□□□ -1.77
SNCA-213ENST00000618500 TMEM186Q96B77 213 aa4□□□□□ -1.77
SNCA-213ENST00000618500 TM4SF18Q96CE8 201 aa4□□□□□ -1.77
SNCA-213ENST00000618500 LRRC58Q96CX6 371 aa4□□□□□ -1.77
SNCA-213ENST00000618500 MRGPRX4Q96LA9 322 aa4□□□□□ -1.77
SNCA-213ENST00000618500 ADOQ96SZ5 270 aa4□□□□□ -1.77
SNCA-213ENST00000618500 SOX7Q9BT81 388 aa4□□□□□ -1.77
SNCA-213ENST00000618500 SORBS1Q9BX66 1292 aaKnown RBP4□□□□□ -1.77
SNCA-213ENST00000618500 CHODLQ9H9P2 273 aa4□□□□□ -1.77
SNCA-213ENST00000618500 TAS2R16Q9NYV7 291 aa4□□□□□ -1.77
SNCA-213ENST00000618500 TFR2Q9UP52 801 aa4□□□□□ -1.77
SNCA-213ENST00000618500 GPC6Q9Y625 555 aaPredicted RBP4□□□□□ -1.77
SNCA-213ENST00000618500 CAPN6Q9Y6Q1 641 aa4□□□□□ -1.77
SNCA-213ENST00000618500 DYNC2H1Q8NCM8 4307 aaKnown RBP4□□□□□ -1.77
SNCA-213ENST00000618500 UQCRHLA0A096LP55 91 aa4□□□□□ -1.77
SNCA-213ENST00000618500 ESYT3A0FGR9 886 aa4□□□□□ -1.77
SNCA-213ENST00000618500 TMEM229AB2RXF0 380 aa4□□□□□ -1.77
SNCA-213ENST00000618500 STX16-NPEPL1H3BU86 382 aa4□□□□□ -1.77
SNCA-213ENST00000618500 STX16O14662 325 aa4□□□□□ -1.77
SNCA-213ENST00000618500 TNFSF11O14788 317 aa4□□□□□ -1.77
SNCA-213ENST00000618500 SEC14L5O43304 696 aa4□□□□□ -1.77
SNCA-213ENST00000618500 CXCL13O43927 109 aa4□□□□□ -1.77
SNCA-213ENST00000618500 NKX2-2O95096 273 aa4□□□□□ -1.77
SNCA-213ENST00000618500 NDUFA7O95182 113 aa4□□□□□ -1.77
SNCA-213ENST00000618500 IGLV1-44P01699 117 aa4□□□□□ -1.77
SNCA-213ENST00000618500 MSMBP08118 114 aa4□□□□□ -1.77
SNCA-213ENST00000618500 EPHA1P21709 976 aa4□□□□□ -1.77
SNCA-213ENST00000618500 ZNF41P51814 821 aaPredicted RBP4□□□□□ -1.77
SNCA-213ENST00000618500 EXOSC7Q15024 291 aaKnown RBP4□□□□□ -1.77
SNCA-213ENST00000618500 GRAMD1BQ3KR37 738 aa4□□□□□ -1.77
SNCA-213ENST00000618500 MIDNQ504T8 468 aa4□□□□□ -1.77
SNCA-213ENST00000618500 GLE1Q53GS7 698 aaKnown RBP4□□□□□ -1.77
SNCA-213ENST00000618500 GALNT18Q6P9A2 607 aa4□□□□□ -1.77
SNCA-213ENST00000618500 UBQLNLQ8IYU4 475 aa4□□□□□ -1.77
SNCA-213ENST00000618500 OR6Y1Q8NGX8 325 aa4□□□□□ -1.77
SNCA-213ENST00000618500 ZFP90Q8TF47 636 aa4□□□□□ -1.77
SNCA-213ENST00000618500 POP5Q969H6 163 aaKnown RBP4□□□□□ -1.77
SNCA-213ENST00000618500 CNRIP1Q96F85 164 aaPredicted RBP4□□□□□ -1.77
SNCA-213ENST00000618500 NAP1L3Q99457 506 aaPredicted RBP4□□□□□ -1.77
SNCA-213ENST00000618500 ZNF416Q9BWM5 594 aa4□□□□□ -1.77
SNCA-213ENST00000618500 SRXN1Q9BYN0 137 aa4□□□□□ -1.77
SNCA-213ENST00000618500 BPESC1Q9GZL8 116 aa4□□□□□ -1.77
SNCA-213ENST00000618500 PRDM13Q9H4Q3 707 aa4□□□□□ -1.77
SNCA-213ENST00000618500 GRHL1Q9NZI5 618 aa4□□□□□ -1.77
SNCA-213ENST00000618500 MED11Q9P086 117 aa4□□□□□ -1.77
SNCA-213ENST00000618500 A0A1W2PS29 197 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 H0YC42 278 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 CCNT2O60583 730 aaKnown RBP3.99□□□□□ -1.77
SNCA-213ENST00000618500 UTS2O95399 124 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 ANGPTL1O95841 491 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 PPIAL4GP0DN37 164 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 ME2P23368 584 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 CRABP2P29373 138 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 ANP32AP39687 249 aaKnown RBP3.99□□□□□ -1.77
SNCA-213ENST00000618500 MAPK12P53778 367 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 TPD52P55327 224 aaPredicted RBP3.99□□□□□ -1.77
SNCA-213ENST00000618500 SRSF2Q01130 221 aaKnown RBP3.99□□□□□ -1.77
SNCA-213ENST00000618500 RASGEF1BQ0VAM2 473 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 SLC29A2Q14542 456 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 ZNF362Q5T0B9 420 aaPredicted RBP3.99□□□□□ -1.77
SNCA-213ENST00000618500 TTC27Q6P3X3 843 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 GALNT5Q7Z7M9 940 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 TUSC5Q8IXB3 177 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 PLD6Q8N2A8 252 aaKnown RBP3.99□□□□□ -1.77
SNCA-213ENST00000618500 SPATA6LQ8N4H0 392 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 OR7G2Q8NG99 324 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 SLC25A43Q8WUT9 341 aaPredicted RBP3.99□□□□□ -1.77
SNCA-213ENST00000618500 OSTF1Q92882 214 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 REXO5Q96IC2 774 aaKnown RBP3.99□□□□□ -1.77
SNCA-213ENST00000618500 METTL2AQ96IZ6 378 aaKnown RBP3.99□□□□□ -1.77
SNCA-213ENST00000618500 GPA33Q99795 319 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 CPNE1Q99829 537 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 HOXD1Q9GZZ0 328 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 ZNF385DQ9H6B1 395 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 Q9N2J8 555 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 SLC52A3Q9NQ40 469 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 CD274Q9NZQ7 290 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 PACSIN2Q9UNF0 486 aaPredicted RBP3.99□□□□□ -1.77
SNCA-213ENST00000618500 STK38LQ9Y2H1 464 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 NPIPB8E9PQR5 432 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 GPR171O14626 319 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 EIF3HO15372 352 aaKnown RBP eCLIP3.99□□□□□ -1.77
SNCA-213ENST00000618500 CLDN9O95484 217 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 PMS2P2O95744 297 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 ANPEPP15144 967 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 RNF144AP50876 292 aaPredicted RBP3.99□□□□□ -1.77
SNCA-213ENST00000618500 RAB10P61026 200 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 DUSP2Q05923 314 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 IFT88Q13099 833 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 STK11Q15831 433 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 TRMT12Q53H54 448 aaKnown RBP3.99□□□□□ -1.77
SNCA-213ENST00000618500 CCNYL2Q5T2Q4 361 aa3.99□□□□□ -1.77
SNCA-213ENST00000618500 SHQ1Q6PI26 577 aaKnown RBP3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms