RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 MRTO4Q9UKD2 239 aaKnown RBP12.22□□□□□ -0.45
LINC00540-202ENST00000616974 ACAD8Q9UKU7 415 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 ICAM5Q9UMF0 924 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 ZNF337Q9Y3M9 751 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 A1L4Q6 167 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 DUXAA6NLW8 204 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 FRS3O43559 492 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 AGFG2O95081 481 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 NGFRP08138 427 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 HPGDP15428 266 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 SHC1P29353 583 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 CPA2P48052 419 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 SUCLG1P53597 346 aaKnown RBP12.21□□□□□ -0.45
LINC00540-202ENST00000616974 CLDN20P56880 219 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 NFYCQ13952 458 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 GLIPR1L2Q4G1C9 344 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 VASNQ6EMK4 673 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 PIGWQ7Z7B1 504 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 PTOV1Q86YD1 416 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 NFKBIDQ8NI38 313 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 POC1BQ8TC44 478 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 CNOT9Q92600 299 aaKnown RBP12.21□□□□□ -0.45
LINC00540-202ENST00000616974 ANKRD27Q96NW4 1050 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 TREX2Q9BQ50 279 aaPredicted RBP12.21□□□□□ -0.45
LINC00540-202ENST00000616974 OR2B2Q9GZK3 357 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 SAP130Q9H0E3 1048 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 B4GALT7Q9UBV7 327 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 DKKL1Q9UK85 242 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 CAPN7Q9Y6W3 813 aa12.21□□□□□ -0.45
LINC00540-202ENST00000616974 OR2M5A3KFT3 312 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 AQP7O14520 342 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 SUSD5O60279 629 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 GCM2O75603 506 aaPredicted RBP12.2□□□□□ -0.46
LINC00540-202ENST00000616974 KRT75O95678 551 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 KRT16P08779 473 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 NR2F1P10589 423 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 SRD5A2P31213 254 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 CCR4P51679 360 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 HOXC5Q00444 222 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 SKP2Q13309 424 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 ZNF141Q15928 474 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 UBQLNLQ8IYU4 475 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 ZNF619Q8N2I2 560 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 CCT8L2Q96SF2 557 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 EXD2Q9NVH0 621 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 ADAM21Q9UKJ8 722 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 DTNAQ9Y4J8 743 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 DSPPQ9NZW4 1301 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 IGLV3-32A0A0A0MS00 114 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 SERINC4A6NH21 518 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 AP3D1O14617 1153 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 TOXO94900 526 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 EPPINO95925 133 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 HK1P19367 917 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 RYKP34925 604 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 LHX2P50458 406 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 C17orf67Q0P5P2 114 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 ATAD3BQ5T9A4 648 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 RAET1LQ5VY80 246 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 NANOGP8Q6NSW7 305 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 BNC2Q6ZN30 1099 aaPredicted RBP12.2□□□□□ -0.46
LINC00540-202ENST00000616974 CLIP4Q8N3C7 705 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 SMPDL3BQ92485 455 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 WDYHV1Q96HA8 205 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 TRNT1Q96Q11 434 aaKnown RBP12.2□□□□□ -0.46
LINC00540-202ENST00000616974 NANOGQ9H9S0 305 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 MED17Q9NVC6 651 aa12.2□□□□□ -0.46
LINC00540-202ENST00000616974 A0A1W2PQD3 144 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 CCT8L1PA6NM43 557 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 H3BML4 177 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 MRASO14807 208 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 GKN3PP0CG01 181 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 PEPDP12955 493 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 PRG2P13727 222 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 PSMA4P25789 261 aaKnown RBP12.19□□□□□ -0.46
LINC00540-202ENST00000616974 COL8A1P27658 744 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 PGM1P36871 562 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 ADH7P40394 386 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 CRYBA2P53672 197 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 CLDN18P56856 261 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 PSPHP78330 225 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 LRRC74AQ0VAA2 488 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 FOXF1Q12946 379 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 PLPPR5Q32ZL2 321 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 C4orf17Q53FE4 359 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 RPTNQ6XPR3 784 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 ZNF836Q6ZNA1 936 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 IFNEQ86WN2 208 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 FAM26EQ8N5C1 309 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 NAXEQ8NCW5 288 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 OR10A6Q8NH74 314 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 SFXN2Q96NB2 322 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 PRR14Q9BWN1 585 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 PACSIN3Q9UKS6 424 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 MEMO1Q9Y316 297 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 PCDHGB3Q9Y5G1 929 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 AGAP5A6NIR3 686 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 AIM2O14862 343 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 TPST1O60507 370 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 HCN1O60741 890 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms