RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ZNF311Q5JNZ3 666 aa10.81□□□□□ -0.68
LDLR-212ENST00000560467 FIGNL1Q6PIW4 674 aa10.81□□□□□ -0.68
LDLR-212ENST00000560467 CBLL1Q75N03 491 aa10.81□□□□□ -0.68
LDLR-212ENST00000560467 WDR53Q7Z5U6 358 aaPredicted RBP10.81□□□□□ -0.68
LDLR-212ENST00000560467 CYP4Z1Q86W10 505 aa10.81□□□□□ -0.68
LDLR-212ENST00000560467 ZNF619Q8N2I2 560 aa10.81□□□□□ -0.68
LDLR-212ENST00000560467 SLC15A4Q8N697 577 aa10.81□□□□□ -0.68
LDLR-212ENST00000560467 PIK3R3Q92569 461 aa10.81□□□□□ -0.68
LDLR-212ENST00000560467 HOXB13Q92826 284 aaPredicted RBP10.81□□□□□ -0.68
LDLR-212ENST00000560467 SLC47A1Q96FL8 570 aa10.81□□□□□ -0.68
LDLR-212ENST00000560467 SDF2Q99470 211 aa10.81□□□□□ -0.68
LDLR-212ENST00000560467 VCX3BQ9H321 246 aa10.81□□□□□ -0.68
LDLR-212ENST00000560467 SERHL2Q9H4I8 314 aa10.81□□□□□ -0.68
LDLR-212ENST00000560467 KLHL1Q9NR64 748 aa10.81□□□□□ -0.68
LDLR-212ENST00000560467 CCM2LQ9NUG4 571 aaPredicted RBP10.81□□□□□ -0.68
LDLR-212ENST00000560467 ANKRD10Q9NXR5 420 aa10.81□□□□□ -0.68
LDLR-212ENST00000560467 USP22Q9UPT9 525 aa10.81□□□□□ -0.68
LDLR-212ENST00000560467 NPIPA5E9PKD4 350 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 SCDO00767 359 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 MAN1A2O60476 641 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 IFNW1P05000 195 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 CT45A8P0DMV1 189 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 CT45A9P0DMV2 189 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 NAGAP17050 411 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 AGAP20933 346 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 FASP25445 335 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 PSG6Q00889 435 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 CHRNEQ04844 493 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 EBPQ15125 230 aaKnown RBP10.8□□□□□ -0.68
LDLR-212ENST00000560467 SNCBQ16143 134 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 LIN52Q52LA3 116 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 IFI44LQ53G44 452 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 CT45A2Q5DJT8 189 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 CDH24Q86UP0 819 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 C10orf111Q8N326 155 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 MDS2Q8NDY4 140 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 NFAM1Q8NET5 270 aaPredicted RBP10.8□□□□□ -0.68
LDLR-212ENST00000560467 OR52P1PQ8NH57 321 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 PYDC1Q8WXC3 89 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 GEMIN6Q8WXD5 167 aaKnown RBP10.8□□□□□ -0.68
LDLR-212ENST00000560467 SDCCAG3Q96C92 435 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 TMCO6Q96DC7 493 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 GPR137Q96N19 417 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 SIGLEC12Q96PQ1 595 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 CHID1Q9BWS9 393 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 PINK1Q9BXM7 581 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 UBQLN4Q9NRR5 601 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.8□□□□□ -0.68
LDLR-212ENST00000560467 ARMC1Q9NVT9 282 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 C6orf203Q9P0P8 240 aaPredicted RBP10.8□□□□□ -0.68
LDLR-212ENST00000560467 GMPR2Q9P2T1 348 aaKnown RBP10.8□□□□□ -0.68
LDLR-212ENST00000560467 STOML1Q9UBI4 398 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 MKLN1Q9UL63 735 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 NPIPA1Q9UND3 350 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 ZNF835Q9Y2P0 537 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 MEMO1Q9Y316 297 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 GPC6Q9Y625 555 aaPredicted RBP10.8□□□□□ -0.68
LDLR-212ENST00000560467 V9GYQ6 96 aa10.8□□□□□ -0.68
LDLR-212ENST00000560467 SPG11Q96JI7 2443 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 GXYLT2A0PJZ3 443 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 H0Y3Z8 333 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 TP53I11O14683 189 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 TO15178 435 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 DEAF1O75398 565 aaPredicted RBP10.79□□□□□ -0.68
LDLR-212ENST00000560467 CLDN14O95500 239 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 ATP6V1G2O95670 118 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 IL33O95760 270 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 C1QCP02747 245 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 FABP3P05413 133 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 THBS1P07996 1170 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 CHRM4P08173 479 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 UQCRBP14927 111 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 PRKAR1BP31321 381 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 MAP3K8P41279 467 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 GPR143P51810 404 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 PNLIPRP2P54317 469 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 PCBP3P57721 371 aaKnown RBP10.79□□□□□ -0.68
LDLR-212ENST00000560467 SMIM11AP58511 58 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 HSF1Q00613 529 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 ALDH6A1Q02252 535 aaKnown RBP10.79□□□□□ -0.68
LDLR-212ENST00000560467 DUSP8Q13202 625 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 TUBA3CQ13748 450 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 RCN1Q15293 331 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 OR1C1Q15619 314 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 NNATQ16517 81 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.79□□□□□ -0.68
LDLR-212ENST00000560467 ACER2Q5QJU3 275 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 CCNJQ5T5M9 372 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 TUBA3EQ6PEY2 450 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 OPN5Q6U736 354 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 Q6ZPB1 254 aaPredicted RBP10.79□□□□□ -0.68
LDLR-212ENST00000560467 C9orf40Q8IXQ3 194 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 DND1Q8IYX4 353 aaKnown RBP10.79□□□□□ -0.68
LDLR-212ENST00000560467 ZNF614Q8N883 585 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 ZNF321PQ8N8H1 164 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 SIMC1Q8NDZ2 872 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 THAP3Q8WTV1 239 aaPredicted RBP10.79□□□□□ -0.68
LDLR-212ENST00000560467 CANT1Q8WVQ1 401 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 TMBIM1Q969X1 311 aa10.79□□□□□ -0.68
LDLR-212ENST00000560467 ADIPOR1Q96A54 375 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms