RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	SERPINB4	P48594	390 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	PRIM2	P49643	509 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	CLDN20	P56880	219 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	POU6F2	P78424	691 aa	Predicted RBP	7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	C17orf67	Q0P5P2	114 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	SGCB	Q16585	318 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	PGS1	Q32NB8	556 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	FBXL19-AS1	Q494R0	122 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	C6orf136	Q5SQH8	315 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	CEP85L	Q5SZL2	805 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	LCE3B	Q5TA77	95 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	VWA1	Q6PCB0	445 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	LRIG3	Q6UXM1	1119 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	LINC00114	Q6XXX2	140 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	ADGRE4P	Q86SQ3	457 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	CDC20B	Q86Y33	519 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	MREG	Q8N565	214 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	ZNF614	Q8N883	585 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	ZNF781	Q8N8C0	355 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	OR5AK3P	Q8NH89	298 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	FNDC9	Q8TBE3	224 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	FAM222B	Q8WU58	562 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	MTERF3	Q96E29	417 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	ZNF764	Q96H86	408 aa	Predicted RBP	7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	NPAS1	Q99742	590 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	PAIP2	Q9BPZ3	127 aa	Known RBP	7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	PIGQ	Q9BRB3	760 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	SFXN3	Q9BWM7	321 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	ACBD3	Q9H3P7	528 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	CXorf36	Q9H7Y0	433 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	KCNK9	Q9NPC2	374 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	CCM2L	Q9NUG4	571 aa	Predicted RBP	7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	ATAD3A	Q9NVI7	634 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	ATP6V1H	Q9UI12	483 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	FOXD3	Q9UJU5	478 aa	Predicted RBP	7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	PACSIN3	Q9UKS6	424 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	EIF3L	Q9Y262	564 aa	Known RBP	7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	PLEKHA6	Q9Y2H5	1048 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	MRPS18C	Q9Y3D5	142 aa	Known RBP	7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	C2CD3	Q4AC94	2353 aa		7.82	□□□□□ -1.16
RFX3-209	ENST00000451859	VPS13C	Q709C8	3753 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	TTC36	A6NLP5	189 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	ALG1L2	C9J202	215 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	HCRTR2	O43614	444 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	NUDT14	O95848	222 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	IFI6	P09912	130 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	G6PD	P11413	515 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	DDX5	P17844	614 aa	Known RBP	7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	ATP6V1C1	P21283	382 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	BGN	P21810	368 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	PEX19	P40855	299 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	MAP3K8	P41279	467 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	EIF1AX	P47813	144 aa	Known RBP	7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	KCNJ5	P48544	419 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	CCT3	P49368	545 aa	Known RBP	7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	ZNF41	P51814	821 aa	Predicted RBP	7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	IST1	P53990	364 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	DIO3	P55073	304 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	CLDN15	P56746	228 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	EEFSEC	P57772	596 aa	Known RBP	7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	ABCE1	P61221	599 aa	Known RBP	7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	RPS26	P62854	115 aa	Known RBP	7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	POU4F2	Q12837	409 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	PON3	Q15166	354 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	NDUFAF6	Q330K2	333 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	CDC73	Q6P1J9	531 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	CLEC4F	Q8N1N0	589 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	TMCO5A	Q8N6Q1	288 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	ANKRD42	Q8N9B4	389 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	OR56A1	Q8NGH5	318 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	OR5D16	Q8NGK9	328 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	OR6Y1	Q8NGX8	325 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	RFWD2	Q8NHY2	731 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	PHOSPHO1	Q8TCT1	267 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	ADAMTS15	Q8TE58	950 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	HOXB13	Q92826	284 aa	Predicted RBP	7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	PGM2	Q96G03	612 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	RNF145	Q96MT1	663 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	ZFP3	Q96NJ6	502 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	ZIM3	Q96PE6	472 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	KLHDC3	Q9BQ90	382 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	DUSP26	Q9BV47	211 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	BTBD2	Q9BX70	525 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	PRRG4	Q9BZD6	226 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	OPN3	Q9H1Y3	402 aa	Predicted RBP	7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	RASSF1	Q9NS23	344 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	JKAMP	Q9P055	326 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	CLEC4A	Q9UMR7	237 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	FAF1	Q9UNN5	650 aa	Predicted RBP	7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	KCNE3	Q9Y6H6	103 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	ARID1A	O14497	2285 aa		7.81	□□□□□ -1.16
RFX3-209	ENST00000451859	ZNF469	Q96JG9	3925 aa	Predicted RBP	7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	SH3D21	A4FU49	640 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	ZNF500	O60304	480 aa	Predicted RBP	7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	TNFSF13	O75888	250 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	SERPINE1	P05121	402 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	EPX	P11678	715 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	PRPS1L1	P21108	318 aa		7.8	□□□□□ -1.16
RFX3-209	ENST00000451859	TBXA2R	P21731	343 aa		7.8	□□□□□ -1.16

Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms