RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 ARHGAP40Q5TG30 622 aa13.62□□□□□ -0.23
VPS33B-205ENST00000556096 ZAR1Q86SH2 424 aa13.62□□□□□ -0.23
VPS33B-205ENST00000556096 GRAMD2AQ8IUY3 354 aa13.62□□□□□ -0.23
VPS33B-205ENST00000556096 P3H2Q8IVL5 708 aa13.62□□□□□ -0.23
VPS33B-205ENST00000556096 RCBTB1Q8NDN9 531 aa13.62□□□□□ -0.23
VPS33B-205ENST00000556096 GNPDA2Q8TDQ7 276 aa13.62□□□□□ -0.23
VPS33B-205ENST00000556096 ACOT11Q8WXI4 607 aaPredicted RBP13.62□□□□□ -0.23
VPS33B-205ENST00000556096 SGCDQ92629 289 aa13.62□□□□□ -0.23
VPS33B-205ENST00000556096 SLC41A3Q96GZ6 507 aa13.62□□□□□ -0.23
VPS33B-205ENST00000556096 SENP5Q96HI0 755 aaPredicted RBP13.62□□□□□ -0.23
VPS33B-205ENST00000556096 ZNF226Q9NYT6 803 aa13.62□□□□□ -0.23
VPS33B-205ENST00000556096 AASSQ9UDR5 926 aa13.62□□□□□ -0.23
VPS33B-205ENST00000556096 NPIPA5A0A0B4J1W7 369 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 TCRBV16S1A1N1A0A5B0 115 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 NPIPA7E9PJI5 369 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 NPIPB9F8W1W9 429 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 IGKV1D-16P01601 117 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 TP53P04637 393 aaPredicted RBP13.61□□□□□ -0.23
VPS33B-205ENST00000556096 ZNF883P0CG24 379 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 NPIPA8P0DM63 369 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 RORAP35398 523 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 KRT20P35900 424 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 IDH2P48735 452 aaKnown RBP13.61□□□□□ -0.23
VPS33B-205ENST00000556096 PSMD4P55036 377 aaKnown RBP13.61□□□□□ -0.23
VPS33B-205ENST00000556096 HOXC5Q00444 222 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 ELAVL1Q15717 326 aaKnown RBP13.61□□□□□ -0.23
VPS33B-205ENST00000556096 ZNF141Q15928 474 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 MINDY4Q4G0A6 757 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 STPG1Q5TH74 334 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 SLX4IPQ5VYV7 408 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 XAF1Q6GPH4 301 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 GDF7Q7Z4P5 450 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 ALDH16A1Q8IZ83 802 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 OR4N2Q8NGD1 307 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 IFI44Q8TCB0 444 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 SLC35B4Q969S0 331 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 SLC46A1Q96NT5 459 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 MYCBPQ99417 103 aaPredicted RBP13.61□□□□□ -0.23
VPS33B-205ENST00000556096 TGIF2Q9GZN2 237 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 PNO1Q9NRX1 252 aaKnown RBP13.61□□□□□ -0.23
VPS33B-205ENST00000556096 IMPAD1Q9NX62 359 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 TESQ9UGI8 421 aaKnown RBP13.61□□□□□ -0.23
VPS33B-205ENST00000556096 CBLCQ9ULV8 474 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 CFL2Q9Y281 166 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 TRAPPC13A5PLN9 417 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 CCDC160A6NGH7 325 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 VGLL3A8MV65 326 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 ZNF701M0R085 212 aaPredicted RBP13.61□□□□□ -0.23
VPS33B-205ENST00000556096 FAM20BO75063 409 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 THY1P04216 161 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 SLC37A1P57057 533 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 TUBA3CQ13748 450 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 RAB39AQ14964 217 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 NEDD8Q15843 81 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 SMN1Q16637 294 aaKnown RBP13.61□□□□□ -0.23
VPS33B-205ENST00000556096 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.61□□□□□ -0.23
VPS33B-205ENST00000556096 MFSD4BQ5TF39 518 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 C1orf189Q5VU69 101 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 ZNF730Q6ZMV8 503 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 RRM2BQ7LG56 351 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 ZNF540Q8NDQ6 660 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 PLPP5Q8NEB5 264 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 OIT3Q8WWZ8 545 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 TSLPQ969D9 159 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 CCDC74BQ96LY2 380 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 TSC22D3Q99576 134 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 ITPAQ9BY32 194 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.61□□□□□ -0.23
VPS33B-205ENST00000556096 C14orf105Q9NVL8 296 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 RSL24D1Q9UHA3 163 aaKnown RBP13.61□□□□□ -0.23
VPS33B-205ENST00000556096 COMMD3-BMI1R4GMX3 469 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 NUP210LQ5VU65 1888 aa13.61□□□□□ -0.23
VPS33B-205ENST00000556096 PTPRZ1P23471 2315 aaPredicted RBP13.6□□□□□ -0.23
VPS33B-205ENST00000556096 COL5A1P20908 1838 aaPredicted RBP13.6□□□□□ -0.23
VPS33B-205ENST00000556096 IGKV3-11P04433 115 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 ITIH1P19827 911 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 PCMT1P22061 227 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 POU1F1P28069 291 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 PPICP45877 212 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 GSSP48637 474 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 ATP12AP54707 1039 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 DAB2P98082 770 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 TSPAN31Q12999 210 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 VWA2Q5GFL6 755 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 PDZK1Q5T2W1 519 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 TMEM236Q5W0B7 351 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 C12orf73Q69YU5 71 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 DBX2Q6ZNG2 339 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 PRICKLE2Q7Z3G6 844 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 NKAIN4Q8IVV8 208 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 CCDC103Q8IW40 242 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 CMIPQ8IY22 773 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 NLGN4XQ8N0W4 816 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 BCORP1Q8N888 145 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 ZSCAN1Q8NBB4 408 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 OR13F1Q8NGS4 319 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 PIGXQ8TBF5 258 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 TRUB1Q8WWH5 349 aaKnown RBP13.6□□□□□ -0.23
VPS33B-205ENST00000556096 ART5Q96L15 291 aa13.6□□□□□ -0.23
VPS33B-205ENST00000556096 OR6C1Q96RD1 312 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms