RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 A0A1W2PRB8 838 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 FAM221AA4D161 298 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 SCDO00767 359 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 MSTNO14793 375 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 RGS16O15492 202 aaPredicted RBP12.58□□□□□ -0.4
USP4-206ENST00000461553 TYROBPO43914 113 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 TNFSF13O75888 250 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 SMNDC1O75940 238 aaKnown RBP eCLIP12.58□□□□□ -0.4
USP4-206ENST00000461553 KCNK2O95069 426 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 KRT16P08779 473 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 DNASE1P24855 282 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 ZNF41P51814 821 aaPredicted RBP12.58□□□□□ -0.4
USP4-206ENST00000461553 IST1P53990 364 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 POU6F2P78424 691 aaPredicted RBP12.58□□□□□ -0.4
USP4-206ENST00000461553 MAD2L1Q13257 205 aaPredicted RBP12.58□□□□□ -0.4
USP4-206ENST00000461553 TP53BP2Q13625 1128 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 FGFBP1Q14512 234 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 LASP1Q14847 261 aaKnown RBP12.58□□□□□ -0.4
USP4-206ENST00000461553 DAZAP2Q15038 168 aaPredicted RBP12.58□□□□□ -0.4
USP4-206ENST00000461553 SPDYE7PQ495Y7 208 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 CPTPQ5TA50 214 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 PPP4R4Q6NUP7 873 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 APOOLQ6UXV4 268 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 MISPQ8IVT2 679 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 MREGQ8N565 214 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 NATD1Q8N6N6 113 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 OR56A1Q8NGH5 318 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 PKNOX2Q96KN3 472 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 STACQ99469 402 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 PRPF18Q99633 342 aaKnown RBP12.58□□□□□ -0.4
USP4-206ENST00000461553 TMEM109Q9BVC6 243 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 SIRT3Q9NTG7 399 aaPredicted RBP12.58□□□□□ -0.4
USP4-206ENST00000461553 ZDHHC2Q9UIJ5 367 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 EIF3LQ9Y262 564 aaKnown RBP12.58□□□□□ -0.4
USP4-206ENST00000461553 ZNF337Q9Y3M9 751 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 AP4B1Q9Y6B7 739 aa12.58□□□□□ -0.4
USP4-206ENST00000461553 A0A087WZY1 265 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 SH3D21A4FU49 640 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 H0YC42 278 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 TNFRSF21O75509 655 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 HMGN2P05204 90 aaKnown RBP12.57□□□□□ -0.4
USP4-206ENST00000461553 LAMP1P11279 417 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 CREB1P16220 341 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 ATP6V1C1P21283 382 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 TBXA2RP21731 343 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 ARRB2P32121 409 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 SOAT1P35610 550 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 ETV4P43268 484 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 SUCLG1P53597 346 aaKnown RBP12.57□□□□□ -0.4
USP4-206ENST00000461553 TPD52P55327 224 aaPredicted RBP12.57□□□□□ -0.4
USP4-206ENST00000461553 CLDN20P56880 219 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 SIRPAP78324 504 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 PON3Q15166 354 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 PDCD2Q16342 344 aaPredicted RBP12.57□□□□□ -0.4
USP4-206ENST00000461553 SGCBQ16585 318 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 LSM12Q3MHD2 195 aaKnown RBP12.57□□□□□ -0.4
USP4-206ENST00000461553 C6orf136Q5SQH8 315 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 CCNJQ5T5M9 372 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 IL23RQ5VWK5 629 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 CDC73Q6P1J9 531 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 VWA1Q6PCB0 445 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 PAMR1Q6UXH9 720 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 NUDCD3Q8IVD9 361 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 METTL25Q8N6Q8 603 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 FNDC9Q8TBE3 224 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 SFXN5Q8TD22 340 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 OR5P2Q8WZ92 322 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 FIG4Q92562 907 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 CDS1Q92903 461 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 ZBTB8AQ96BR9 441 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 C16orf58Q96GQ5 468 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 C3orf30Q96M34 536 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 DACH2Q96NX9 599 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 FOXC2Q99958 501 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 BTBD2Q9BX70 525 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 UBQLN4Q9NRR5 601 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 DUSP22Q9NRW4 184 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 CCM2LQ9NUG4 571 aaPredicted RBP12.57□□□□□ -0.4
USP4-206ENST00000461553 NOP53Q9NZM5 478 aaKnown RBP12.57□□□□□ -0.4
USP4-206ENST00000461553 FAF1Q9UNN5 650 aaPredicted RBP12.57□□□□□ -0.4
USP4-206ENST00000461553 PLEKHA6Q9Y2H5 1048 aa12.57□□□□□ -0.4
USP4-206ENST00000461553 FLNAP21333 2647 aaKnown RBP12.57□□□□□ -0.4
USP4-206ENST00000461553 A0A1W2PQD3 144 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 A8MXE2 369 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 SHISA8B8ZZ34 492 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 EIF1AYO14602 144 aaKnown RBP12.56□□□□□ -0.4
USP4-206ENST00000461553 CFLARO15519 480 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 CTIFO43310 598 aaKnown RBP12.56□□□□□ -0.4
USP4-206ENST00000461553 C6orf47O95873 294 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 SERPINE1P05121 402 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 PRPS1L1P21108 318 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 CLDN15P56746 228 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 OCRLQ01968 901 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 ZNF844Q08AG5 666 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 ZAR1Q86SH2 424 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 GTPBP8Q8N3Z3 284 aaPredicted RBP12.56□□□□□ -0.4
USP4-206ENST00000461553 KRTCAP2Q8N6L1 136 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 ZNF527Q8NB42 609 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 CHDHQ8NE62 594 aaPredicted RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms