RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 NAXEQ8NCW5 288 aa13.42□□□□□ -0.26
LIMS4-201ENST00000413601 OR5D16Q8NGK9 328 aa13.42□□□□□ -0.26
LIMS4-201ENST00000413601 OR5M1Q8NGP8 315 aa13.42□□□□□ -0.26
LIMS4-201ENST00000413601 ZPLD1Q8TCW7 415 aa13.42□□□□□ -0.26
LIMS4-201ENST00000413601 C1GALT1C1Q96EU7 318 aa13.42□□□□□ -0.26
LIMS4-201ENST00000413601 OR7D2Q96RA2 312 aa13.42□□□□□ -0.26
LIMS4-201ENST00000413601 TUBA1CQ9BQE3 449 aa13.42□□□□□ -0.26
LIMS4-201ENST00000413601 RUBCNLQ9H714 662 aa13.42□□□□□ -0.26
LIMS4-201ENST00000413601 NPDC1Q9NQX5 325 aaPredicted RBP13.42□□□□□ -0.26
LIMS4-201ENST00000413601 UBQLN4Q9NRR5 601 aa13.42□□□□□ -0.26
LIMS4-201ENST00000413601 ARGLU1Q9NWB6 273 aaPredicted RBP13.42□□□□□ -0.26
LIMS4-201ENST00000413601 GPR45Q9Y5Y3 372 aa13.42□□□□□ -0.26
LIMS4-201ENST00000413601 HEATR5AQ86XA9 2040 aa13.42□□□□□ -0.26
LIMS4-201ENST00000413601 IGLV3-32A0A0A0MS00 114 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 NPIPA5A0A0B4J1W7 369 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 RNF103-CHMP3A0A140T963 221 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 CD8B2A6NJW9 211 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 NPIPA7E9PJI5 369 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 IL2RAP01589 272 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 NPIPA8P0DM63 369 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 HPGDP15428 266 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 ZNF708P17019 499 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 ATP6V1C1P21283 382 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 MATN1P21941 496 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 IL12AP29459 219 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 LCN1P31025 176 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 TIMP3P35625 211 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 DGKQP52824 942 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 CASP9P55211 416 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 CLDN18P56856 261 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 GANABQ14697 944 aaKnown RBP13.41□□□□□ -0.26
LIMS4-201ENST00000413601 DPY19L1Q2PZI1 675 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 DCST2Q5T1A1 773 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 RAET1LQ5VY80 246 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 PLXDC2Q6UX71 529 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 MEX3BQ6ZN04 569 aaKnown RBP13.41□□□□□ -0.26
LIMS4-201ENST00000413601 VPS37AQ8NEZ2 397 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 PIWIL2Q8TC59 973 aaKnown RBP13.41□□□□□ -0.26
LIMS4-201ENST00000413601 MAELQ96JY0 434 aaKnown RBP13.41□□□□□ -0.26
LIMS4-201ENST00000413601 MARK4Q96L34 752 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 SH3GL2Q99962 352 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 ENKD1Q9H0I2 346 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 SERHL2Q9H4I8 314 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 CALHM2Q9HA72 323 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 CENPEQ02224 2701 aa13.41□□□□□ -0.26
LIMS4-201ENST00000413601 OR2M5A3KFT3 312 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 MBD3L4A6NDZ8 208 aaPredicted RBP13.4□□□□□ -0.26
LIMS4-201ENST00000413601 MBD3L3A6NE82 208 aaPredicted RBP13.4□□□□□ -0.26
LIMS4-201ENST00000413601 MBD3L5A6NJ08 208 aaPredicted RBP13.4□□□□□ -0.26
LIMS4-201ENST00000413601 SCDO00767 359 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 ZNF195O14628 629 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 SOX30O94993 753 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 BMP5P22003 454 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 MSX1P28360 303 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 RNF144AP50876 292 aaPredicted RBP13.4□□□□□ -0.26
LIMS4-201ENST00000413601 ARSKQ6UWY0 536 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 UBQLNLQ8IYU4 475 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 GOLGA6L1Q8N7Z2 621 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 ACBD4Q8NC06 268 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 MBD3L2Q8NHZ7 208 aaPredicted RBP13.4□□□□□ -0.26
LIMS4-201ENST00000413601 ACTRT2Q8TDY3 377 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 SH3YL1Q96HL8 342 aaPredicted RBP13.4□□□□□ -0.26
LIMS4-201ENST00000413601 SLC35G5Q96KT7 338 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 OR52B2Q96RD2 323 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 SPOCK3Q9BQ16 436 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 TRIM8Q9BZR9 551 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 VIPAS39Q9H9C1 493 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 VDAC3Q9Y277 283 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 ZNF337Q9Y3M9 751 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 USH1CQ9Y6N9 552 aa13.4□□□□□ -0.26
LIMS4-201ENST00000413601 A0A1W2PQD3 144 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 DUXAA6NLW8 204 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 CLCA1A8K7I4 914 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 SHISA8B8ZZ34 492 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 H3BML4 177 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 PEPDP12955 493 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 IGFBP2P18065 325 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 POU3F2P20265 443 aaPredicted RBP13.39□□□□□ -0.27
LIMS4-201ENST00000413601 UQCRC2P22695 453 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 ZNF136P52737 540 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 CD226Q15762 336 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 BCL2A1Q16548 175 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 SLC25A35Q3KQZ1 300 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 GLYR1Q49A26 553 aaPredicted RBP13.39□□□□□ -0.27
LIMS4-201ENST00000413601 FLYWCH1Q4VC44 716 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 POMZP3Q6PJE2 187 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 ADGRE4PQ86SQ3 457 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 ZNF295-AS1Q8N0V1 137 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 C9orf106Q8NAJ2 232 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 RELL2Q8NC24 303 aaPredicted RBP13.39□□□□□ -0.27
LIMS4-201ENST00000413601 PHOSPHO1Q8TCT1 267 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 LRRC8CQ8TDW0 803 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 CCDC115Q96NT0 180 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 OR52E6Q96RD3 313 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 SDF2Q99470 211 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 ZBTB18Q99592 522 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 KLHDC3Q9BQ90 382 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 PIGQQ9BRB3 760 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 OR51I1Q9H343 314 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 SLCO1B3Q9NPD5 702 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms