RNA–Protein interactions for RNA: YNL022C

RCM1, Transcript of rRNA m5C methyltransferase, yeast

Gene RCM1, Length 1,473 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RCM1	YNL022C	BET3	P36149	193 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	TAT1	P38085	619 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	DSS1	P39112	969 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	GDH3	P39708	457 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	MMM1	P41800	426 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	YJL045W	P47052	634 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	PEX8	P53248	589 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	PUS7	Q08647	676 aa	Known RBP	5.26	□□□□□ -1.57
RCM1	YNL022C	FAP7	Q12055	197 aa	Predicted RBP	5.26	□□□□□ -1.57
RCM1	YNL022C	SLX4	Q12098	748 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	YDR215C	Q12240	137 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	PSK1	P31374	1356 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	COQ4	O13525	335 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	RPS4A	P0CX35	261 aa	Known RBP	5.26	□□□□□ -1.57
RCM1	YNL022C	RPS4B	P0CX36	261 aa	Known RBP	5.26	□□□□□ -1.57
RCM1	YNL022C	GSY1	P23337	708 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	PWP2	P25635	923 aa	Known RBP	5.26	□□□□□ -1.57
RCM1	YNL022C	MBP1	P39678	833 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	SIP5	P40210	489 aa	Known RBP	5.26	□□□□□ -1.57
RCM1	YNL022C	SDA1	P53313	767 aa	Known RBP	5.26	□□□□□ -1.57
RCM1	YNL022C	YNL193W	P53870	558 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	UME1	Q03010	460 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	THI73	Q07904	523 aa		5.26	□□□□□ -1.57
RCM1	YNL022C	THS1	P04801	734 aa	Known RBP	5.25	□□□□□ -1.57
RCM1	YNL022C	PRS1	P32895	427 aa	Known RBP	5.25	□□□□□ -1.57
RCM1	YNL022C	CCZ1	P38273	704 aa		5.25	□□□□□ -1.57
RCM1	YNL022C	CIT3	P43635	486 aa		5.25	□□□□□ -1.57
RCM1	YNL022C	PRY1	P47032	299 aa		5.25	□□□□□ -1.57
RCM1	YNL022C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	5.25	□□□□□ -1.57	not detected
RCM1	YNL022C	HOS3	Q02959	697 aa	Known RBP	5.25	□□□□□ -1.57
RCM1	YNL022C	RPL11A	P0C0W9	174 aa	Known RBP	5.24	□□□□□ -1.57
RCM1	YNL022C	YER152C	P10356	443 aa		5.24	□□□□□ -1.57
RCM1	YNL022C	YEF3	P16521	1044 aa	Known RBP	5.24	□□□□□ -1.57
RCM1	YNL022C	YSC84	P32793	468 aa		5.24	□□□□□ -1.57
RCM1	YNL022C	VPS24	P36095	224 aa	Known RBP	5.24	□□□□□ -1.57
RCM1	YNL022C	SAF1	P38352	637 aa		5.24	□□□□□ -1.57
RCM1	YNL022C	PNT1	P38969	423 aa		5.24	□□□□□ -1.57
RCM1	YNL022C	TNA1	P53322	534 aa		5.24	□□□□□ -1.57
RCM1	YNL022C	YDL121C	Q07541	149 aa		5.24	□□□□□ -1.57
RCM1	YNL022C	ACM1	Q08981	209 aa		5.24	□□□□□ -1.57
RCM1	YNL022C	RPL11B	Q3E757	174 aa	Predicted RBP	5.24	□□□□□ -1.57
RCM1	YNL022C	TY4B-H	P0C2J7	1802 aa		5.24	□□□□□ -1.57
RCM1	YNL022C	TY4B-J	P47024	1803 aa		5.24	□□□□□ -1.57
RCM1	YNL022C	TRX2	P22803	104 aa	Known RBP	5.23	□□□□□ -1.57
RCM1	YNL022C	SRO9	P25567	434 aa	Known RBP	5.23	□□□□□ -1.57
RCM1	YNL022C	COQ2	P32378	372 aa		5.23	□□□□□ -1.57
RCM1	YNL022C	AKR1	P39010	764 aa		5.23	□□□□□ -1.57
RCM1	YNL022C	GPB2	P39717	880 aa		5.23	□□□□□ -1.57
RCM1	YNL022C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	5.23	□□□□□ -1.57	not detected
RCM1	YNL022C	YJR120W	P47157	116 aa		5.23	□□□□□ -1.57
RCM1	YNL022C	SRP1	Q02821	542 aa	Known RBP	5.23	□□□□□ -1.57
RCM1	YNL022C	NBA1	Q08229	501 aa	Known RBP	5.23	□□□□□ -1.57
RCM1	YNL022C	NSI1	Q12457	570 aa		5.23	□□□□□ -1.57
RCM1	YNL022C	AAR2	P32357	355 aa	Predicted RBP	5.22	□□□□□ -1.57
RCM1	YNL022C	DOM34	P33309	386 aa		5.22	□□□□□ -1.57
RCM1	YNL022C	MDJ1	P35191	511 aa		5.22	□□□□□ -1.57
RCM1	YNL022C	BAP2	P38084	609 aa		5.22	□□□□□ -1.57
RCM1	YNL022C	YBR284W	P38150	797 aa		5.22	□□□□□ -1.57
RCM1	YNL022C	FUI1	P38196	639 aa		5.22	□□□□□ -1.57
RCM1	YNL022C	YHL012W	P38709	493 aa		5.22	□□□□□ -1.57
RCM1	YNL022C	SIT1	P39980	628 aa		5.22	□□□□□ -1.57
RCM1	YNL022C	ICP55	P40051	511 aa		5.22	□□□□□ -1.57
RCM1	YNL022C	YFR016C	P43597	1233 aa	Known RBP	5.22	□□□□□ -1.57
RCM1	YNL022C	SND1	Q04007	877 aa		5.22	□□□□□ -1.57
RCM1	YNL022C	YDR306C	Q06640	478 aa		5.22	□□□□□ -1.57
RCM1	YNL022C	YOR378W	Q08902	515 aa		5.22	□□□□□ -1.57
RCM1	YNL022C	PUS1	Q12211	544 aa	Known RBP	5.22	□□□□□ -1.57
RCM1	YNL022C	HBN1	Q96VH4	193 aa		5.22	□□□□□ -1.57
RCM1	YNL022C	SNF2	P22082	1703 aa		5.22	□□□□□ -1.57
RCM1	YNL022C	PGM1	P33401	570 aa	Known RBP	5.21	□□□□□ -1.58
RCM1	YNL022C	SKN7	P38889	622 aa		5.21	□□□□□ -1.58
RCM1	YNL022C	PIK1	P39104	1066 aa		5.21	□□□□□ -1.58
RCM1	YNL022C	TMA64	Q04600	565 aa	Known RBP	5.21	□□□□□ -1.58
RCM1	YNL022C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	5.21	□□□□□ -1.58	not detected
RCM1	YNL022C	CHS2	P14180	963 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	RAD53	P22216	821 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	YCK2	P23292	546 aa	Known RBP	5.2	□□□□□ -1.58
RCM1	YNL022C	MDL2	P33311	773 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	ATG16	Q03818	150 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	HFD1	Q04458	532 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	DUS3	Q06053	668 aa	Known RBP	5.2	□□□□□ -1.58
RCM1	YNL022C	TRE2	Q08693	809 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	YLL058W	Q12198	575 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	YVC1	Q12324	675 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	YIL177C	P40434	1758 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	YJL225C	P40889	1758 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	LEU2	P04173	364 aa	Predicted RBP	5.2	□□□□□ -1.58
RCM1	YNL022C	ATP4	P05626	244 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	TOP3	P13099	656 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	MSB1	P21339	1137 aa	Known RBP	5.2	□□□□□ -1.58
RCM1	YNL022C	MEF1	P25039	761 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	VBA3	P25594	458 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	HIR1	P32479	840 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	SLA2	P33338	968 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	SLN1	P39928	1220 aa	Predicted RBP	5.2	□□□□□ -1.58
RCM1	YNL022C	MAL11	P53048	616 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	PEX14	P53112	341 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	MDM12	Q92328	271 aa		5.2	□□□□□ -1.58
RCM1	YNL022C	SNF5	P18480	905 aa		5.19	□□□□□ -1.58
RCM1	YNL022C	HBS1	P32769	611 aa	Known RBP	5.19	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms