RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 DICER1Q9UPY3 1922 aaKnown RBP21.23■□□□□ 0.99
CLN3-246ENST00000636228 ARFGEF2Q9Y6D5 1785 aa21.23■□□□□ 0.99
CLN3-246ENST00000636228 FZD9O00144 591 aa21.22■□□□□ 0.99
CLN3-246ENST00000636228 HOXA10P31260 410 aaPredicted RBP21.22■□□□□ 0.99
CLN3-246ENST00000636228 ERBB4Q15303 1308 aa21.22■□□□□ 0.99
CLN3-246ENST00000636228 HSPA1AP0DMV8 641 aaKnown RBP21.21■□□□□ 0.99
CLN3-246ENST00000636228 HSPA1BP0DMV9 641 aaKnown RBP21.21■□□□□ 0.99
CLN3-246ENST00000636228 AIMP1Q12904 312 aaKnown RBP21.21■□□□□ 0.99
CLN3-246ENST00000636228 KRT24Q2M2I5 525 aa21.21■□□□□ 0.99
CLN3-246ENST00000636228 LDHDQ86WU2 507 aa21.21■□□□□ 0.99
CLN3-246ENST00000636228 RBM17Q96I25 401 aaKnown RBP21.21■□□□□ 0.99
CLN3-246ENST00000636228 HACL1Q9UJ83 578 aa21.21■□□□□ 0.99
CLN3-246ENST00000636228 CLEC11AQ9Y240 323 aa21.21■□□□□ 0.99
CLN3-246ENST00000636228 RNF123Q5XPI4 1314 aa21.21■□□□□ 0.99
CLN3-246ENST00000636228 PPP1R42Q7Z4L9 355 aa21.2■□□□□ 0.98
CLN3-246ENST00000636228 PSMD1Q99460 953 aa21.2■□□□□ 0.98
CLN3-246ENST00000636228 CREBZFQ9NS37 354 aa21.2■□□□□ 0.98
CLN3-246ENST00000636228 LAS1LQ9Y4W2 734 aaKnown RBP21.2■□□□□ 0.98
CLN3-246ENST00000636228 SNED1Q8TER0 1413 aa21.2■□□□□ 0.98
CLN3-246ENST00000636228 PPEF1O14829 653 aaPredicted RBP21.19■□□□□ 0.98
CLN3-246ENST00000636228 EPHX2P34913 555 aa21.19■□□□□ 0.98
CLN3-246ENST00000636228 COPS6Q7L5N1 327 aa21.19■□□□□ 0.98
CLN3-246ENST00000636228 JDP2Q8WYK2 163 aa21.19■□□□□ 0.98
CLN3-246ENST00000636228 ZNF428Q96B54 188 aa21.19■□□□□ 0.98
CLN3-246ENST00000636228 GJA3Q9Y6H8 435 aa21.19■□□□□ 0.98
CLN3-246ENST00000636228 PARP10Q53GL7 1025 aa21.18■□□□□ 0.98
CLN3-246ENST00000636228 XAGE3Q8WTP9 111 aa21.18■□□□□ 0.98
CLN3-246ENST00000636228 NLRP3Q96P20 1036 aa21.18■□□□□ 0.98
CLN3-246ENST00000636228 CRAMP1Q96RY5 1269 aa21.18■□□□□ 0.98
CLN3-246ENST00000636228 UTP14AQ9BVJ6 771 aaKnown RBP21.18■□□□□ 0.98
CLN3-246ENST00000636228 IBTKQ9P2D0 1353 aaPredicted RBP21.18■□□□□ 0.98
CLN3-246ENST00000636228 ITGBL1O95965 494 aaPredicted RBP21.17■□□□□ 0.98
CLN3-246ENST00000636228 LMOD3Q0VAK6 560 aa21.17■□□□□ 0.98
CLN3-246ENST00000636228 CC2D2BQ6DHV5 1058 aa21.17■□□□□ 0.98
CLN3-246ENST00000636228 BABAM1Q9NWV8 329 aa21.17■□□□□ 0.98
CLN3-246ENST00000636228 PASKQ96RG2 1323 aa21.17■□□□□ 0.98
CLN3-246ENST00000636228 MYBBP1AQ9BQG0 1328 aaKnown RBP21.17■□□□□ 0.98
CLN3-246ENST00000636228 NUP98P52948 1817 aa21.17■□□□□ 0.98
CLN3-246ENST00000636228 COL4A5P29400 1685 aa21.16■□□□□ 0.98
CLN3-246ENST00000636228 RIC1Q4ADV7 1423 aa21.16■□□□□ 0.98
CLN3-246ENST00000636228 MAP1SQ66K74 1059 aaPredicted RBP21.16■□□□□ 0.98
CLN3-246ENST00000636228 GPC2Q8N158 579 aa21.16■□□□□ 0.98
CLN3-246ENST00000636228 LARGE2Q8N3Y3 721 aa21.16■□□□□ 0.98
CLN3-246ENST00000636228 TRIM35Q9UPQ4 493 aa21.16■□□□□ 0.98
CLN3-246ENST00000636228 PCNTO95613 3336 aa21.15■□□□□ 0.98
CLN3-246ENST00000636228 HCLS1P14317 486 aaPredicted RBP21.15■□□□□ 0.98
CLN3-246ENST00000636228 EIF6P56537 245 aaKnown RBP21.15■□□□□ 0.98
CLN3-246ENST00000636228 SLC10A5Q5PT55 438 aa21.15■□□□□ 0.98
CLN3-246ENST00000636228 CHL1O00533 1208 aa21.14■□□□□ 0.97
CLN3-246ENST00000636228 CAPN15O75808 1086 aa21.14■□□□□ 0.97
CLN3-246ENST00000636228 NLRP10Q86W26 655 aa21.14■□□□□ 0.97
CLN3-246ENST00000636228 TNS4Q8IZW8 715 aa21.14■□□□□ 0.97
CLN3-246ENST00000636228 WDR43Q15061 677 aaKnown RBP eCLIP21.13■□□□□ 0.97
CLN3-246ENST00000636228 PNMA8AQ86V59 439 aaPredicted RBP21.13■□□□□ 0.97
CLN3-246ENST00000636228 CNTROBQ8N137 903 aa21.13■□□□□ 0.97
CLN3-246ENST00000636228 RUNDC1Q96C34 613 aa21.13■□□□□ 0.97
CLN3-246ENST00000636228 ADAMTS8Q9UP79 889 aa21.13■□□□□ 0.97
CLN3-246ENST00000636228 ABCC4O15439 1325 aa21.12■□□□□ 0.97
CLN3-246ENST00000636228 TMEM88BA6NKF7 163 aa21.12■□□□□ 0.97
CLN3-246ENST00000636228 AOC3Q16853 763 aa21.12■□□□□ 0.97
CLN3-246ENST00000636228 DDX21Q9NR30 783 aaKnown RBP eCLIP21.12■□□□□ 0.97
CLN3-246ENST00000636228 CHPF2Q9P2E5 772 aa21.12■□□□□ 0.97
CLN3-246ENST00000636228 ATP6V0A2Q9Y487 856 aa21.12■□□□□ 0.97
CLN3-246ENST00000636228 PPIP5K2O43314 1243 aa21.11■□□□□ 0.97
CLN3-246ENST00000636228 EPS15P42566 896 aa21.11■□□□□ 0.97
CLN3-246ENST00000636228 TCIRG1Q13488 830 aa21.11■□□□□ 0.97
CLN3-246ENST00000636228 TRMT112Q9UI30 125 aaKnown RBP21.11■□□□□ 0.97
CLN3-246ENST00000636228 CNTNAP1P78357 1384 aa21.1■□□□□ 0.97
CLN3-246ENST00000636228 VEGFBP49765 207 aa21.1■□□□□ 0.97
CLN3-246ENST00000636228 SCNN1DP51172 638 aa21.1■□□□□ 0.97
CLN3-246ENST00000636228 GRIPAP1Q4V328 841 aa21.1■□□□□ 0.97
CLN3-246ENST00000636228 HSP90AB3PQ58FF7 597 aa21.1■□□□□ 0.97
CLN3-246ENST00000636228 NIM1KQ8IY84 436 aa21.1■□□□□ 0.97
CLN3-246ENST00000636228 TMX4Q9H1E5 349 aaPredicted RBP21.1■□□□□ 0.97
CLN3-246ENST00000636228 SCN4AP35499 1836 aa21.09■□□□□ 0.97
CLN3-246ENST00000636228 LMOD1P29536 600 aaPredicted RBP21.09■□□□□ 0.97
CLN3-246ENST00000636228 FMR1Q06787 632 aaKnown RBP eCLIP21.09■□□□□ 0.97
CLN3-246ENST00000636228 HDGFL1Q5TGJ6 251 aa21.08■□□□□ 0.97
CLN3-246ENST00000636228 SH3TC1Q8TE82 1336 aa21.07■□□□□ 0.96
CLN3-246ENST00000636228 BBOX1O75936 387 aa21.07■□□□□ 0.96
CLN3-246ENST00000636228 ATP5J2-PTCD1G3V325 749 aa21.06■□□□□ 0.96
CLN3-246ENST00000636228 FOXN1O15353 648 aa21.06■□□□□ 0.96
CLN3-246ENST00000636228 DPP8Q6V1X1 898 aaPredicted RBP21.06■□□□□ 0.96
CLN3-246ENST00000636228 DDX46Q7L014 1031 aaKnown RBP21.06■□□□□ 0.96
CLN3-246ENST00000636228 SP8Q8IXZ3 490 aa21.06■□□□□ 0.96
CLN3-246ENST00000636228 CXCL9Q07325 125 aa21.05■□□□□ 0.96
CLN3-246ENST00000636228 RTL5Q5HYW3 569 aaPredicted RBP21.05■□□□□ 0.96
CLN3-246ENST00000636228 ANKRD13DQ6ZTN6 518 aa21.05■□□□□ 0.96
CLN3-246ENST00000636228 MPNDQ8N594 471 aa21.05■□□□□ 0.96
CLN3-246ENST00000636228 ADAMTSL1Q8N6G6 1762 aa21.05■□□□□ 0.96
CLN3-246ENST00000636228 LTBP1Q14766 1721 aa21.04■□□□□ 0.96
CLN3-246ENST00000636228 GRAPQ13588 217 aa21.04■□□□□ 0.96
CLN3-246ENST00000636228 DEFB115Q30KQ5 88 aa21.04■□□□□ 0.96
CLN3-246ENST00000636228 DUSP27Q5VZP5 1158 aa21.04■□□□□ 0.96
CLN3-246ENST00000636228 SUPT20HQ8NEM7 779 aa21.04■□□□□ 0.96
CLN3-246ENST00000636228 PLBD2Q8NHP8 589 aa21.04■□□□□ 0.96
CLN3-246ENST00000636228 GRAPLQ8TC17 118 aaPredicted RBP21.04■□□□□ 0.96
CLN3-246ENST00000636228 FAM89AQ96GI7 184 aa21.04■□□□□ 0.96
CLN3-246ENST00000636228 RTFDC1Q9BY42 306 aaPredicted RBP21.04■□□□□ 0.96
CLN3-246ENST00000636228 MBIPQ9NS73 344 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms