RNA–Protein interactions for RNA: ENST00000618819.4

PTPN9-206, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PTPN9, Length 7,813 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-206ENST00000618819 CEP85LQ5SZL2 805 aa16.57■□□□□ 0.24
PTPN9-206ENST00000618819 ZNF354CQ86Y25 554 aa16.57■□□□□ 0.24
PTPN9-206ENST00000618819 RAB34Q9BZG1 259 aa16.57■□□□□ 0.24
PTPN9-206ENST00000618819 MKNK2Q9HBH9 465 aa16.57■□□□□ 0.24
PTPN9-206ENST00000618819 LIMCH1Q9UPQ0 1083 aa16.57■□□□□ 0.24
PTPN9-206ENST00000618819 CCDC194A0A1B0GVG4 234 aa16.57■□□□□ 0.24
PTPN9-206ENST00000618819 RANBP6O60518 1105 aaKnown RBP16.57■□□□□ 0.24
PTPN9-206ENST00000618819 ABTB2Q8N961 1025 aa16.57■□□□□ 0.24
PTPN9-206ENST00000618819 CABP4P57796 275 aa16.57■□□□□ 0.24
PTPN9-206ENST00000618819 CCDC25Q86WR0 208 aa16.57■□□□□ 0.24
PTPN9-206ENST00000618819 PLEKHH1Q9ULM0 1364 aa16.57■□□□□ 0.24
PTPN9-206ENST00000618819 KARSQ15046 597 aaKnown RBP16.56■□□□□ 0.24
PTPN9-206ENST00000618819 SETDB1Q15047 1291 aa16.56■□□□□ 0.24
PTPN9-206ENST00000618819 GOLGA8AA7E2F4 631 aa16.56■□□□□ 0.24
PTPN9-206ENST00000618819 WDR78Q5VTH9 848 aa16.56■□□□□ 0.24
PTPN9-206ENST00000618819 SMC1BQ8NDV3 1235 aa16.56■□□□□ 0.24
PTPN9-206ENST00000618819 FERMT1Q9BQL6 677 aa16.56■□□□□ 0.24
PTPN9-206ENST00000618819 CCDC77Q9BR77 488 aa16.56■□□□□ 0.24
PTPN9-206ENST00000618819 HGSO14964 777 aaPredicted RBP16.56■□□□□ 0.24
PTPN9-206ENST00000618819 SETSIPP0DME0 302 aa16.56■□□□□ 0.24
PTPN9-206ENST00000618819 KIF20AO95235 890 aa16.56■□□□□ 0.24
PTPN9-206ENST00000618819 FAM76AQ8TAV0 307 aa16.56■□□□□ 0.24
PTPN9-206ENST00000618819 STRN4Q9NRL3 753 aa16.56■□□□□ 0.24
PTPN9-206ENST00000618819 DDX12PQ92771 950 aa16.55■□□□□ 0.24
PTPN9-206ENST00000618819 CALML4Q96GE6 196 aa16.55■□□□□ 0.24
PTPN9-206ENST00000618819 LUC7L2Q9Y383 392 aaKnown RBP16.55■□□□□ 0.24
PTPN9-206ENST00000618819 CIB2O75838 187 aa16.55■□□□□ 0.24
PTPN9-206ENST00000618819 CTCFLQ8NI51 663 aaPredicted RBP16.55■□□□□ 0.24
PTPN9-206ENST00000618819 MKRN1Q9UHC7 482 aaKnown RBP16.55■□□□□ 0.24
PTPN9-206ENST00000618819 ARID5AQ03989 594 aa16.55■□□□□ 0.24
PTPN9-206ENST00000618819 SMG6Q86US8 1419 aaKnown RBP16.55■□□□□ 0.24
PTPN9-206ENST00000618819 UBE2HP62256 183 aa16.55■□□□□ 0.24
PTPN9-206ENST00000618819 LMNTD2Q8IXW0 634 aa16.55■□□□□ 0.24
PTPN9-206ENST00000618819 NAPBQ9H115 298 aa16.55■□□□□ 0.24
PTPN9-206ENST00000618819 U2AF2P26368 475 aaKnown RBP eCLIP16.54■□□□□ 0.24
PTPN9-206ENST00000618819 WHAMMQ8TF30 809 aa16.54■□□□□ 0.24
PTPN9-206ENST00000618819 AFMP43652 599 aa16.54■□□□□ 0.24
PTPN9-206ENST00000618819 CCDC170Q8IYT3 715 aa16.54■□□□□ 0.24
PTPN9-206ENST00000618819 TACC1O75410 805 aa16.54■□□□□ 0.24
PTPN9-206ENST00000618819 INTS8Q75QN2 995 aaKnown RBP16.54■□□□□ 0.24
PTPN9-206ENST00000618819 CASQ2O14958 399 aaPredicted RBP16.54■□□□□ 0.24
PTPN9-206ENST00000618819 CYLC1P35663 651 aaPredicted RBP16.54■□□□□ 0.24
PTPN9-206ENST00000618819 SYNCQ9H7C4 482 aa16.54■□□□□ 0.24
PTPN9-206ENST00000618819 EPSTI1Q96J88 318 aa16.54■□□□□ 0.24
PTPN9-206ENST00000618819 SYT1P21579 422 aa16.54■□□□□ 0.24
PTPN9-206ENST00000618819 ZNF853P0CG23 659 aa16.54■□□□□ 0.24
PTPN9-206ENST00000618819 RRAGBQ5VZM2 374 aa16.54■□□□□ 0.24
PTPN9-206ENST00000618819 BICDL1Q6ZP65 573 aa16.54■□□□□ 0.24
PTPN9-206ENST00000618819 UBLCP1Q8WVY7 318 aaPredicted RBP16.54■□□□□ 0.24
PTPN9-206ENST00000618819 OGFRQ9NZT2 677 aa16.54■□□□□ 0.24
PTPN9-206ENST00000618819 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.54■□□□□ 0.24
PTPN9-206ENST00000618819 MYCNP04198 464 aaPredicted RBP16.53■□□□□ 0.24
PTPN9-206ENST00000618819 VIMP08670 466 aaKnown RBP16.53■□□□□ 0.24
PTPN9-206ENST00000618819 HPDP32754 393 aaPredicted RBP16.53■□□□□ 0.24
PTPN9-206ENST00000618819 CFAP157Q5JU67 520 aa16.53■□□□□ 0.24
PTPN9-206ENST00000618819 MRVI1Q9Y6F6 885 aa16.53■□□□□ 0.24
PTPN9-206ENST00000618819 CCDC196A0A1B0GTZ2 297 aa16.53■□□□□ 0.24
PTPN9-206ENST00000618819 XRCC6P12956 609 aaKnown RBP eCLIP16.53■□□□□ 0.24
PTPN9-206ENST00000618819 LZTFL1Q9NQ48 299 aa16.53■□□□□ 0.24
PTPN9-206ENST00000618819 SPG7Q9UQ90 795 aa16.53■□□□□ 0.24
PTPN9-206ENST00000618819 AOPEPQ8N6M6 819 aa16.53■□□□□ 0.24
PTPN9-206ENST00000618819 AMPD3Q01432 767 aa16.53■□□□□ 0.24
PTPN9-206ENST00000618819 PSMD6Q15008 389 aa16.53■□□□□ 0.24
PTPN9-206ENST00000618819 TBC1D5Q92609 795 aa16.53■□□□□ 0.24
PTPN9-206ENST00000618819 RAD54L2Q9Y4B4 1467 aa16.53■□□□□ 0.24
PTPN9-206ENST00000618819 METTL24Q5JXM2 366 aa16.52■□□□□ 0.24
PTPN9-206ENST00000618819 PHF23Q9BUL5 403 aaPredicted RBP16.52■□□□□ 0.24
PTPN9-206ENST00000618819 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.52■□□□□ 0.24
PTPN9-206ENST00000618819 PIP4K2BP78356 416 aa16.52■□□□□ 0.24
PTPN9-206ENST00000618819 SF3B2Q13435 895 aaKnown RBP16.52■□□□□ 0.24
PTPN9-206ENST00000618819 SYT10Q6XYQ8 523 aa16.52■□□□□ 0.24
PTPN9-206ENST00000618819 CCDC50Q8IVM0 306 aa16.52■□□□□ 0.24
PTPN9-206ENST00000618819 DDX27Q96GQ7 796 aaKnown RBP16.52■□□□□ 0.24
PTPN9-206ENST00000618819 IFIT3O14879 490 aaKnown RBP16.52■□□□□ 0.24
PTPN9-206ENST00000618819 CACNA2D3Q8IZS8 1091 aa16.52■□□□□ 0.24
PTPN9-206ENST00000618819 EXOC1Q9NV70 894 aa16.52■□□□□ 0.24
PTPN9-206ENST00000618819 SF3A3Q12874 501 aaKnown RBP eCLIP16.52■□□□□ 0.23
PTPN9-206ENST00000618819 NEDD9Q14511 834 aa16.52■□□□□ 0.23
PTPN9-206ENST00000618819 CCDC102BQ68D86 513 aa16.52■□□□□ 0.23
PTPN9-206ENST00000618819 TRIM7Q9C029 511 aa16.52■□□□□ 0.23
PTPN9-206ENST00000618819 TCP11L1Q9NUJ3 509 aa16.52■□□□□ 0.23
PTPN9-206ENST00000618819 CNPY2Q9Y2B0 182 aa16.52■□□□□ 0.23
PTPN9-206ENST00000618819 KLHL40Q2TBA0 621 aa16.52■□□□□ 0.23
PTPN9-206ENST00000618819 ZNF213O14771 459 aa16.51■□□□□ 0.23
PTPN9-206ENST00000618819 CRACR2BQ8N4Y2 399 aaPredicted RBP16.51■□□□□ 0.23
PTPN9-206ENST00000618819 GUCA1BQ9UMX6 200 aa16.51■□□□□ 0.23
PTPN9-206ENST00000618819 CUL5Q93034 780 aa16.51■□□□□ 0.23
PTPN9-206ENST00000618819 ATF3P18847 181 aa16.51■□□□□ 0.23
PTPN9-206ENST00000618819 RPAP2Q8IXW5 612 aaPredicted RBP16.51■□□□□ 0.23
PTPN9-206ENST00000618819 WDR63Q8IWG1 891 aa16.51■□□□□ 0.23
PTPN9-206ENST00000618819 SPAG5Q96R06 1193 aa16.51■□□□□ 0.23
PTPN9-206ENST00000618819 MIS18AQ9NYP9 233 aa16.51■□□□□ 0.23
PTPN9-206ENST00000618819 SH3BP5O60239 455 aa16.51■□□□□ 0.23
PTPN9-206ENST00000618819 PLVAPQ9BX97 442 aa16.51■□□□□ 0.23
PTPN9-206ENST00000618819 GLRX3O76003 335 aaKnown RBP16.51■□□□□ 0.23
PTPN9-206ENST00000618819 EEF2P13639 858 aaKnown RBP16.51■□□□□ 0.23
PTPN9-206ENST00000618819 ZNF569Q5MCW4 686 aa16.51■□□□□ 0.23
PTPN9-206ENST00000618819 CCDC8Q9H0W5 538 aaPredicted RBP16.51■□□□□ 0.23
PTPN9-206ENST00000618819 VAT1LQ9HCJ6 419 aa16.51■□□□□ 0.23
PTPN9-206ENST00000618819 SLC4A8Q2Y0W8 1093 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms