RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 SYNE4Q8N205 404 aa14.91□□□□□ -0.02
HIF3A-217ENST00000600236 JDP2Q8WYK2 163 aa14.91□□□□□ -0.02
HIF3A-217ENST00000600236 CRAMP1Q96RY5 1269 aa14.91□□□□□ -0.02
HIF3A-217ENST00000600236 PSMD1Q99460 953 aa14.91□□□□□ -0.02
HIF3A-217ENST00000600236 PRKRIP1Q9H875 184 aaPredicted RBP14.91□□□□□ -0.02
HIF3A-217ENST00000600236 PPEF1O14829 653 aaPredicted RBP14.9□□□□□ -0.02
HIF3A-217ENST00000600236 HOXB7P09629 217 aa14.9□□□□□ -0.02
HIF3A-217ENST00000600236 AIMP1Q12904 312 aaKnown RBP14.9□□□□□ -0.02
HIF3A-217ENST00000600236 CHADLQ6NUI6 762 aa14.9□□□□□ -0.02
HIF3A-217ENST00000600236 OLFM4Q6UX06 510 aa14.9□□□□□ -0.02
HIF3A-217ENST00000600236 COPS6Q7L5N1 327 aa14.9□□□□□ -0.02
HIF3A-217ENST00000600236 LRP10Q7Z4F1 713 aa14.9□□□□□ -0.02
HIF3A-217ENST00000600236 NECTIN2Q92692 538 aa14.9□□□□□ -0.02
HIF3A-217ENST00000600236 L3MBTL3Q96JM7 780 aaPredicted RBP14.9□□□□□ -0.02
HIF3A-217ENST00000600236 DDX21Q9NR30 783 aaKnown RBP eCLIP14.9□□□□□ -0.02
HIF3A-217ENST00000600236 ADAMTS8Q9UP79 889 aa14.9□□□□□ -0.02
HIF3A-217ENST00000600236 ANXA1P04083 346 aa14.89□□□□□ -0.03
HIF3A-217ENST00000600236 PROSER3Q2NL68 480 aa14.89□□□□□ -0.03
HIF3A-217ENST00000600236 IFFO2Q5TF58 517 aa14.89□□□□□ -0.03
HIF3A-217ENST00000600236 HDGFL1Q5TGJ6 251 aa14.89□□□□□ -0.03
HIF3A-217ENST00000600236 XAGE3Q8WTP9 111 aa14.89□□□□□ -0.03
HIF3A-217ENST00000600236 TRIM35Q9UPQ4 493 aa14.89□□□□□ -0.03
HIF3A-217ENST00000600236 EIF6P56537 245 aaKnown RBP14.88□□□□□ -0.03
HIF3A-217ENST00000600236 CALD1Q05682 793 aaKnown RBP14.88□□□□□ -0.03
HIF3A-217ENST00000600236 LDHDQ86WU2 507 aa14.88□□□□□ -0.03
HIF3A-217ENST00000600236 JMYQ8N9B5 988 aa14.88□□□□□ -0.03
HIF3A-217ENST00000600236 CFAP44Q96MT7 982 aa14.88□□□□□ -0.03
HIF3A-217ENST00000600236 HACL1Q9UJ83 578 aa14.88□□□□□ -0.03
HIF3A-217ENST00000600236 CACNA1SQ13698 1873 aa14.88□□□□□ -0.03
HIF3A-217ENST00000600236 ZNF541Q9H0D2 1346 aa14.88□□□□□ -0.03
HIF3A-217ENST00000600236 DICER1Q9UPY3 1922 aaKnown RBP14.88□□□□□ -0.03
HIF3A-217ENST00000600236 FZD9O00144 591 aa14.87□□□□□ -0.03
HIF3A-217ENST00000600236 TCIRG1Q13488 830 aa14.87□□□□□ -0.03
HIF3A-217ENST00000600236 SLC10A5Q5PT55 438 aa14.87□□□□□ -0.03
HIF3A-217ENST00000600236 TAF1DQ9H5J8 278 aaPredicted RBP14.87□□□□□ -0.03
HIF3A-217ENST00000600236 DBF4Q9UBU7 674 aaPredicted RBP14.87□□□□□ -0.03
HIF3A-217ENST00000600236 CCDC88AQ3V6T2 1871 aa14.86□□□□□ -0.03
HIF3A-217ENST00000600236 PNMA8AQ86V59 439 aaPredicted RBP14.86□□□□□ -0.03
HIF3A-217ENST00000600236 NLRP10Q86W26 655 aa14.86□□□□□ -0.03
HIF3A-217ENST00000600236 GPC2Q8N158 579 aa14.86□□□□□ -0.03
HIF3A-217ENST00000600236 LARGE2Q8N3Y3 721 aa14.86□□□□□ -0.03
HIF3A-217ENST00000600236 CHPF2Q9P2E5 772 aa14.86□□□□□ -0.03
HIF3A-217ENST00000600236 TRMT112Q9UI30 125 aaKnown RBP14.86□□□□□ -0.03
HIF3A-217ENST00000600236 NUP98P52948 1817 aa14.86□□□□□ -0.03
HIF3A-217ENST00000600236 SH3TC1Q8TE82 1336 aa14.86□□□□□ -0.03
HIF3A-217ENST00000600236 SNED1Q8TER0 1413 aa14.85□□□□□ -0.03
HIF3A-217ENST00000600236 TCERG1O14776 1098 aaKnown RBP14.85□□□□□ -0.03
HIF3A-217ENST00000600236 KRT24Q2M2I5 525 aa14.85□□□□□ -0.03
HIF3A-217ENST00000600236 EAPPQ56P03 285 aaPredicted RBP14.85□□□□□ -0.03
HIF3A-217ENST00000600236 SUPT20HQ8NEM7 779 aa14.85□□□□□ -0.03
HIF3A-217ENST00000600236 PLBD2Q8NHP8 589 aa14.85□□□□□ -0.03
HIF3A-217ENST00000600236 BBOX1O75936 387 aa14.84□□□□□ -0.03
HIF3A-217ENST00000600236 LMOD1P29536 600 aaPredicted RBP14.84□□□□□ -0.03
HIF3A-217ENST00000600236 EPHX2P34913 555 aa14.84□□□□□ -0.03
HIF3A-217ENST00000600236 GNAI1P63096 354 aa14.84□□□□□ -0.03
HIF3A-217ENST00000600236 DUSP27Q5VZP5 1158 aa14.84□□□□□ -0.03
HIF3A-217ENST00000600236 ANKRD13DQ6ZTN6 518 aa14.84□□□□□ -0.03
HIF3A-217ENST00000600236 C3orf67Q6ZVT6 689 aa14.84□□□□□ -0.03
HIF3A-217ENST00000600236 DDX46Q7L014 1031 aaKnown RBP14.84□□□□□ -0.03
HIF3A-217ENST00000600236 NIM1KQ8IY84 436 aa14.84□□□□□ -0.03
HIF3A-217ENST00000600236 CHMP4AQ9BY43 222 aa14.84□□□□□ -0.03
HIF3A-217ENST00000600236 VPS33BQ9H267 617 aa14.84□□□□□ -0.03
HIF3A-217ENST00000600236 CREBZFQ9NS37 354 aa14.84□□□□□ -0.03
HIF3A-217ENST00000600236 HYPKQ9NX55 129 aa14.84□□□□□ -0.03
HIF3A-217ENST00000600236 CLEC11AQ9Y240 323 aa14.84□□□□□ -0.03
HIF3A-217ENST00000600236 ATP6V0A2Q9Y487 856 aa14.84□□□□□ -0.03
HIF3A-217ENST00000600236 ABCC4O15439 1325 aa14.84□□□□□ -0.03
HIF3A-217ENST00000600236 APAF1O14727 1248 aa14.83□□□□□ -0.04
HIF3A-217ENST00000600236 PPIP5K2O43314 1243 aa14.83□□□□□ -0.04
HIF3A-217ENST00000600236 POTEIP0CG38 1075 aa14.83□□□□□ -0.04
HIF3A-217ENST00000600236 POTEJP0CG39 1038 aa14.83□□□□□ -0.04
HIF3A-217ENST00000600236 MBIPQ9NS73 344 aa14.83□□□□□ -0.04
HIF3A-217ENST00000600236 IFT57Q9NWB7 429 aa14.83□□□□□ -0.04
HIF3A-217ENST00000600236 GJA3Q9Y6H8 435 aa14.83□□□□□ -0.04
HIF3A-217ENST00000600236 HCLS1P14317 486 aaPredicted RBP14.82□□□□□ -0.04
HIF3A-217ENST00000600236 TMC4Q7Z404 712 aa14.82□□□□□ -0.04
HIF3A-217ENST00000600236 SCN4AP35499 1836 aa14.81□□□□□ -0.04
HIF3A-217ENST00000600236 GOLGA2Q08379 1002 aa14.81□□□□□ -0.04
HIF3A-217ENST00000600236 GRAPQ13588 217 aa14.81□□□□□ -0.04
HIF3A-217ENST00000600236 DPP8Q6V1X1 898 aaPredicted RBP14.81□□□□□ -0.04
HIF3A-217ENST00000600236 SP8Q8IXZ3 490 aa14.81□□□□□ -0.04
HIF3A-217ENST00000600236 GRAPLQ8TC17 118 aaPredicted RBP14.81□□□□□ -0.04
HIF3A-217ENST00000600236 HSP90B1P14625 803 aaKnown RBP14.8□□□□□ -0.04
HIF3A-217ENST00000600236 MPNDQ8N594 471 aa14.8□□□□□ -0.04
HIF3A-217ENST00000600236 PASKQ96RG2 1323 aa14.8□□□□□ -0.04
HIF3A-217ENST00000600236 ZNF853P0CG23 659 aa14.79□□□□□ -0.04
HIF3A-217ENST00000600236 AOC3Q16853 763 aa14.79□□□□□ -0.04
HIF3A-217ENST00000600236 RIC3Q7Z5B4 369 aa14.79□□□□□ -0.04
HIF3A-217ENST00000600236 ISCA1Q9BUE6 129 aa14.79□□□□□ -0.04
HIF3A-217ENST00000600236 RTFDC1Q9BY42 306 aaPredicted RBP14.79□□□□□ -0.04
HIF3A-217ENST00000600236 TMEM88BA6NKF7 163 aa14.78□□□□□ -0.04
HIF3A-217ENST00000600236 ATP5J2-PTCD1G3V325 749 aa14.78□□□□□ -0.04
HIF3A-217ENST00000600236 CNTROBQ8N137 903 aa14.78□□□□□ -0.04
HIF3A-217ENST00000600236 MKRN1Q9UHC7 482 aaKnown RBP14.78□□□□□ -0.04
HIF3A-217ENST00000600236 ZNRF3Q9ULT6 936 aa14.78□□□□□ -0.04
HIF3A-217ENST00000600236 ANKRD36CQ5JPF3 1778 aa14.78□□□□□ -0.04
HIF3A-217ENST00000600236 DDX58O95786 925 aaKnown RBP14.77□□□□□ -0.05
HIF3A-217ENST00000600236 ITGBL1O95965 494 aaPredicted RBP14.77□□□□□ -0.05
HIF3A-217ENST00000600236 HSPA1AP0DMV8 641 aaKnown RBP14.77□□□□□ -0.05
HIF3A-217ENST00000600236 HSPA1BP0DMV9 641 aaKnown RBP14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms