RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 MAP3K15Q6ZN16 1313 aa16.4■□□□□ 0.22
UPF1-208ENST00000600012 EIF4A1P60842 406 aaKnown RBP16.39■□□□□ 0.21
UPF1-208ENST00000600012 KIF6Q6ZMV9 814 aa16.39■□□□□ 0.21
UPF1-208ENST00000600012 LDHDQ86WU2 507 aa16.39■□□□□ 0.21
UPF1-208ENST00000600012 THUMPD2Q9BTF0 503 aaKnown RBP16.39■□□□□ 0.21
UPF1-208ENST00000600012 TAF1DQ9H5J8 278 aaPredicted RBP16.39■□□□□ 0.21
UPF1-208ENST00000600012 ZNF277Q9NRM2 450 aaPredicted RBP16.39■□□□□ 0.21
UPF1-208ENST00000600012 ABCC12Q96J65 1359 aa16.38■□□□□ 0.21
UPF1-208ENST00000600012 IBTKQ9P2D0 1353 aaPredicted RBP16.38■□□□□ 0.21
UPF1-208ENST00000600012 RIC1Q4ADV7 1423 aa16.38■□□□□ 0.21
UPF1-208ENST00000600012 SLFN5Q08AF3 891 aa16.38■□□□□ 0.21
UPF1-208ENST00000600012 LMOD3Q0VAK6 560 aa16.38■□□□□ 0.21
UPF1-208ENST00000600012 CRY2Q49AN0 593 aa16.38■□□□□ 0.21
UPF1-208ENST00000600012 OLFM4Q6UX06 510 aa16.38■□□□□ 0.21
UPF1-208ENST00000600012 WDR63Q8IWG1 891 aa16.38■□□□□ 0.21
UPF1-208ENST00000600012 ZNF541Q9H0D2 1346 aa16.38■□□□□ 0.21
UPF1-208ENST00000600012 PCNTO95613 3336 aa16.38■□□□□ 0.21
UPF1-208ENST00000600012 IARSP41252 1262 aaKnown RBP16.37■□□□□ 0.21
UPF1-208ENST00000600012 TNS4Q8IZW8 715 aa16.37■□□□□ 0.21
UPF1-208ENST00000600012 SNED1Q8TER0 1413 aa16.36■□□□□ 0.21
UPF1-208ENST00000600012 E9PSI1 815 aa16.36■□□□□ 0.21
UPF1-208ENST00000600012 DUSP27Q5VZP5 1158 aa16.36■□□□□ 0.21
UPF1-208ENST00000600012 CC2D2BQ6DHV5 1058 aa16.36■□□□□ 0.21
UPF1-208ENST00000600012 TTLL7Q6ZT98 887 aa16.36■□□□□ 0.21
UPF1-208ENST00000600012 NUTM1Q86Y26 1132 aa16.36■□□□□ 0.21
UPF1-208ENST00000600012 SYNE4Q8N205 404 aa16.36■□□□□ 0.21
UPF1-208ENST00000600012 PSMD1Q99460 953 aa16.36■□□□□ 0.21
UPF1-208ENST00000600012 HACL1Q9UJ83 578 aa16.36■□□□□ 0.21
UPF1-208ENST00000600012 ERBB4Q15303 1308 aa16.36■□□□□ 0.21
UPF1-208ENST00000600012 PASKQ96RG2 1323 aa16.36■□□□□ 0.21
UPF1-208ENST00000600012 ADAMTSL1Q8N6G6 1762 aa16.36■□□□□ 0.21
UPF1-208ENST00000600012 FZD9O00144 591 aa16.35■□□□□ 0.21
UPF1-208ENST00000600012 MYL6BP14649 208 aa16.35■□□□□ 0.21
UPF1-208ENST00000600012 RPGRQ92834 1020 aaKnown RBP16.35■□□□□ 0.21
UPF1-208ENST00000600012 MKRN1Q9UHC7 482 aaKnown RBP16.35■□□□□ 0.21
UPF1-208ENST00000600012 GPTP24298 496 aa16.34■□□□□ 0.21
UPF1-208ENST00000600012 HOXA10P31260 410 aaPredicted RBP16.34■□□□□ 0.21
UPF1-208ENST00000600012 EPHX2P34913 555 aa16.34■□□□□ 0.21
UPF1-208ENST00000600012 GRIPAP1Q4V328 841 aa16.34■□□□□ 0.21
UPF1-208ENST00000600012 EAPPQ56P03 285 aaPredicted RBP16.34■□□□□ 0.21
UPF1-208ENST00000600012 TRMT2AQ8IZ69 625 aaKnown RBP16.34■□□□□ 0.21
UPF1-208ENST00000600012 JDP2Q8WYK2 163 aa16.34■□□□□ 0.21
UPF1-208ENST00000600012 ZBTB3Q9H5J0 574 aa16.34■□□□□ 0.21
UPF1-208ENST00000600012 IL16Q14005 1332 aa16.34■□□□□ 0.21
UPF1-208ENST00000600012 UBN2Q6ZU65 1347 aa16.34■□□□□ 0.21
UPF1-208ENST00000600012 CNTNAP1P78357 1384 aa16.34■□□□□ 0.21
UPF1-208ENST00000600012 GIGYF2Q6Y7W6 1299 aaKnown RBP16.33■□□□□ 0.2
UPF1-208ENST00000600012 PNMA8AQ86V59 439 aaPredicted RBP16.33■□□□□ 0.2
UPF1-208ENST00000600012 GPC2Q8N158 579 aa16.33■□□□□ 0.2
UPF1-208ENST00000600012 ITGBL1O95965 494 aaPredicted RBP16.32■□□□□ 0.2
UPF1-208ENST00000600012 SUSD4Q5VX71 490 aa16.32■□□□□ 0.2
UPF1-208ENST00000600012 RNF123Q5XPI4 1314 aa16.32■□□□□ 0.2
UPF1-208ENST00000600012 ZNF34Q8IZ26 560 aa16.32■□□□□ 0.2
UPF1-208ENST00000600012 TSR2Q969E8 191 aaKnown RBP16.32■□□□□ 0.2
UPF1-208ENST00000600012 CRAMP1Q96RY5 1269 aa16.32■□□□□ 0.2
UPF1-208ENST00000600012 TSPYL4Q9UJ04 414 aa16.32■□□□□ 0.2
UPF1-208ENST00000600012 LAS1LQ9Y4W2 734 aaKnown RBP16.32■□□□□ 0.2
UPF1-208ENST00000600012 FANCIQ9NVI1 1328 aa16.31■□□□□ 0.2
UPF1-208ENST00000600012 TMEM88BA6NKF7 163 aa16.31■□□□□ 0.2
UPF1-208ENST00000600012 NTSR2O95665 410 aa16.31■□□□□ 0.2
UPF1-208ENST00000600012 EIF6P56537 245 aaKnown RBP16.31■□□□□ 0.2
UPF1-208ENST00000600012 CALD1Q05682 793 aaKnown RBP16.31■□□□□ 0.2
UPF1-208ENST00000600012 PARP10Q53GL7 1025 aa16.31■□□□□ 0.2
UPF1-208ENST00000600012 PPP1R42Q7Z4L9 355 aa16.31■□□□□ 0.2
UPF1-208ENST00000600012 RBM17Q96I25 401 aaKnown RBP16.31■□□□□ 0.2
UPF1-208ENST00000600012 MYH16Q9H6N6 1097 aa16.31■□□□□ 0.2
UPF1-208ENST00000600012 CLEC11AQ9Y240 323 aa16.31■□□□□ 0.2
UPF1-208ENST00000600012 ANKRD36CQ5JPF3 1778 aa16.31■□□□□ 0.2
UPF1-208ENST00000600012 COL4A5P29400 1685 aa16.3■□□□□ 0.2
UPF1-208ENST00000600012 PPEF1O14829 653 aaPredicted RBP16.29■□□□□ 0.2
UPF1-208ENST00000600012 CAPN15O75808 1086 aa16.29■□□□□ 0.2
UPF1-208ENST00000600012 IFT57Q9NWB7 429 aa16.29■□□□□ 0.2
UPF1-208ENST00000600012 BABAM1Q9NWV8 329 aa16.29■□□□□ 0.2
UPF1-208ENST00000600012 LMOD1P29536 600 aaPredicted RBP16.28■□□□□ 0.2
UPF1-208ENST00000600012 PDIA6Q15084 440 aa16.28■□□□□ 0.2
UPF1-208ENST00000600012 LRP10Q7Z4F1 713 aa16.28■□□□□ 0.2
UPF1-208ENST00000600012 CNTROBQ8N137 903 aa16.28■□□□□ 0.2
UPF1-208ENST00000600012 LARGE2Q8N3Y3 721 aa16.28■□□□□ 0.2
UPF1-208ENST00000600012 NLRP3Q96P20 1036 aa16.28■□□□□ 0.2
UPF1-208ENST00000600012 LTBP1Q14766 1721 aa16.28■□□□□ 0.2
UPF1-208ENST00000600012 ZNF853P0CG23 659 aa16.27■□□□□ 0.2
UPF1-208ENST00000600012 EIF2S2P20042 333 aaKnown RBP16.27■□□□□ 0.2
UPF1-208ENST00000600012 GNAI1P63096 354 aa16.27■□□□□ 0.2
UPF1-208ENST00000600012 MAP1SQ66K74 1059 aaPredicted RBP16.27■□□□□ 0.2
UPF1-208ENST00000600012 UTP14AQ9BVJ6 771 aaKnown RBP16.27■□□□□ 0.2
UPF1-208ENST00000600012 TMX4Q9H1E5 349 aaPredicted RBP16.27■□□□□ 0.2
UPF1-208ENST00000600012 GJA3Q9Y6H8 435 aa16.27■□□□□ 0.2
UPF1-208ENST00000600012 LAMB2P55268 1798 aa16.27■□□□□ 0.2
UPF1-208ENST00000600012 VEGFBP49765 207 aa16.26■□□□□ 0.19
UPF1-208ENST00000600012 SLC10A5Q5PT55 438 aa16.26■□□□□ 0.19
UPF1-208ENST00000600012 C3orf67Q6ZVT6 689 aa16.26■□□□□ 0.19
UPF1-208ENST00000600012 NIM1KQ8IY84 436 aa16.26■□□□□ 0.19
UPF1-208ENST00000600012 CFAP44Q96MT7 982 aa16.26■□□□□ 0.19
UPF1-208ENST00000600012 MBIPQ9NS73 344 aa16.26■□□□□ 0.19
UPF1-208ENST00000600012 SUPT16HQ9Y5B9 1047 aaKnown RBP16.26■□□□□ 0.19
UPF1-208ENST00000600012 TCERG1O14776 1098 aaKnown RBP16.25■□□□□ 0.19
UPF1-208ENST00000600012 FOXN1O15353 648 aa16.25■□□□□ 0.19
UPF1-208ENST00000600012 EXOSC9Q06265 439 aaKnown RBP16.25■□□□□ 0.19
UPF1-208ENST00000600012 PROSER3Q2NL68 480 aa16.25■□□□□ 0.19
UPF1-208ENST00000600012 HSP90AB3PQ58FF7 597 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms