RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 LRP10Q7Z4F1 713 aa16.39■□□□□ 0.21
UPF1-203ENST00000594504 NTSR2O95665 410 aa16.38■□□□□ 0.21
UPF1-203ENST00000594504 RPGRQ92834 1020 aaKnown RBP16.38■□□□□ 0.21
UPF1-203ENST00000594504 TAF1DQ9H5J8 278 aaPredicted RBP16.38■□□□□ 0.21
UPF1-203ENST00000594504 FZD9O00144 591 aa16.37■□□□□ 0.21
UPF1-203ENST00000594504 AIMP1Q12904 312 aaKnown RBP16.37■□□□□ 0.21
UPF1-203ENST00000594504 KRT24Q2M2I5 525 aa16.37■□□□□ 0.21
UPF1-203ENST00000594504 EAPPQ56P03 285 aaPredicted RBP16.37■□□□□ 0.21
UPF1-203ENST00000594504 L3MBTL3Q96JM7 780 aaPredicted RBP16.37■□□□□ 0.21
UPF1-203ENST00000594504 IQCA1LA6NCM1 817 aa16.36■□□□□ 0.21
UPF1-203ENST00000594504 HOXA10P31260 410 aaPredicted RBP16.36■□□□□ 0.21
UPF1-203ENST00000594504 ZNF428Q96B54 188 aa16.36■□□□□ 0.21
UPF1-203ENST00000594504 RBM17Q96I25 401 aaKnown RBP16.36■□□□□ 0.21
UPF1-203ENST00000594504 MKRN1Q9UHC7 482 aaKnown RBP16.36■□□□□ 0.21
UPF1-203ENST00000594504 CLEC11AQ9Y240 323 aa16.36■□□□□ 0.21
UPF1-203ENST00000594504 LAS1LQ9Y4W2 734 aaKnown RBP16.36■□□□□ 0.21
UPF1-203ENST00000594504 ERBB4Q15303 1308 aa16.36■□□□□ 0.21
UPF1-203ENST00000594504 SNED1Q8TER0 1413 aa16.36■□□□□ 0.21
UPF1-203ENST00000594504 SCN4AP35499 1836 aa16.35■□□□□ 0.21
UPF1-203ENST00000594504 HSPA1AP0DMV8 641 aaKnown RBP16.35■□□□□ 0.21
UPF1-203ENST00000594504 HSPA1BP0DMV9 641 aaKnown RBP16.35■□□□□ 0.21
UPF1-203ENST00000594504 COPS6Q7L5N1 327 aa16.35■□□□□ 0.21
UPF1-203ENST00000594504 PPP1R42Q7Z4L9 355 aa16.35■□□□□ 0.21
UPF1-203ENST00000594504 PSMD1Q99460 953 aa16.35■□□□□ 0.21
UPF1-203ENST00000594504 HACL1Q9UJ83 578 aa16.35■□□□□ 0.21
UPF1-203ENST00000594504 RNF123Q5XPI4 1314 aa16.35■□□□□ 0.21
UPF1-203ENST00000594504 COL4A5P29400 1685 aa16.34■□□□□ 0.21
UPF1-203ENST00000594504 EPHX2P34913 555 aa16.34■□□□□ 0.21
UPF1-203ENST00000594504 WDR43Q15061 677 aaKnown RBP eCLIP16.34■□□□□ 0.21
UPF1-203ENST00000594504 LDHDQ86WU2 507 aa16.34■□□□□ 0.21
UPF1-203ENST00000594504 XAGE3Q8WTP9 111 aa16.34■□□□□ 0.21
UPF1-203ENST00000594504 CRAMP1Q96RY5 1269 aa16.34■□□□□ 0.21
UPF1-203ENST00000594504 UTP14AQ9BVJ6 771 aaKnown RBP16.34■□□□□ 0.21
UPF1-203ENST00000594504 CREBZFQ9NS37 354 aa16.34■□□□□ 0.21
UPF1-203ENST00000594504 TRIM35Q9UPQ4 493 aa16.34■□□□□ 0.21
UPF1-203ENST00000594504 PPEF1O14829 653 aaPredicted RBP16.33■□□□□ 0.2
UPF1-203ENST00000594504 ITGBL1O95965 494 aaPredicted RBP16.33■□□□□ 0.2
UPF1-203ENST00000594504 PARP10Q53GL7 1025 aa16.33■□□□□ 0.2
UPF1-203ENST00000594504 JDP2Q8WYK2 163 aa16.33■□□□□ 0.2
UPF1-203ENST00000594504 NLRP3Q96P20 1036 aa16.33■□□□□ 0.2
UPF1-203ENST00000594504 BABAM1Q9NWV8 329 aa16.33■□□□□ 0.2
UPF1-203ENST00000594504 GJA3Q9Y6H8 435 aa16.33■□□□□ 0.2
UPF1-203ENST00000594504 PASKQ96RG2 1323 aa16.33■□□□□ 0.2
UPF1-203ENST00000594504 IBTKQ9P2D0 1353 aaPredicted RBP16.33■□□□□ 0.2
UPF1-203ENST00000594504 LMOD3Q0VAK6 560 aa16.32■□□□□ 0.2
UPF1-203ENST00000594504 SLC10A5Q5PT55 438 aa16.32■□□□□ 0.2
UPF1-203ENST00000594504 MAP1SQ66K74 1059 aaPredicted RBP16.32■□□□□ 0.2
UPF1-203ENST00000594504 CC2D2BQ6DHV5 1058 aa16.32■□□□□ 0.2
UPF1-203ENST00000594504 ADAMTS8Q9UP79 889 aa16.32■□□□□ 0.2
UPF1-203ENST00000594504 RIC1Q4ADV7 1423 aa16.31■□□□□ 0.2
UPF1-203ENST00000594504 CHL1O00533 1208 aa16.31■□□□□ 0.2
UPF1-203ENST00000594504 HCLS1P14317 486 aaPredicted RBP16.31■□□□□ 0.2
UPF1-203ENST00000594504 GPC2Q8N158 579 aa16.31■□□□□ 0.2
UPF1-203ENST00000594504 LARGE2Q8N3Y3 721 aa16.31■□□□□ 0.2
UPF1-203ENST00000594504 RUNDC1Q96C34 613 aa16.31■□□□□ 0.2
UPF1-203ENST00000594504 EIF6P56537 245 aaKnown RBP16.3■□□□□ 0.2
UPF1-203ENST00000594504 TCIRG1Q13488 830 aa16.3■□□□□ 0.2
UPF1-203ENST00000594504 NLRP10Q86W26 655 aa16.3■□□□□ 0.2
UPF1-203ENST00000594504 ABCC4O15439 1325 aa16.29■□□□□ 0.2
UPF1-203ENST00000594504 EPS15P42566 896 aa16.29■□□□□ 0.2
UPF1-203ENST00000594504 AOC3Q16853 763 aa16.29■□□□□ 0.2
UPF1-203ENST00000594504 CNTROBQ8N137 903 aa16.29■□□□□ 0.2
UPF1-203ENST00000594504 DDX21Q9NR30 783 aaKnown RBP eCLIP16.29■□□□□ 0.2
UPF1-203ENST00000594504 CHPF2Q9P2E5 772 aa16.29■□□□□ 0.2
UPF1-203ENST00000594504 TAF1P21675 1872 aa16.29■□□□□ 0.2
UPF1-203ENST00000594504 LAMB2P55268 1798 aa16.28■□□□□ 0.2
UPF1-203ENST00000594504 ADAMTSL1Q8N6G6 1762 aa16.28■□□□□ 0.2
UPF1-203ENST00000594504 LTBP1Q14766 1721 aa16.28■□□□□ 0.2
UPF1-203ENST00000594504 TMEM88BA6NKF7 163 aa16.28■□□□□ 0.2
UPF1-203ENST00000594504 CAPN15O75808 1086 aa16.28■□□□□ 0.2
UPF1-203ENST00000594504 FMR1Q06787 632 aaKnown RBP eCLIP16.28■□□□□ 0.24e-6■■■□□ 17.1
UPF1-203ENST00000594504 PNMA8AQ86V59 439 aaPredicted RBP16.28■□□□□ 0.2
UPF1-203ENST00000594504 TRMT112Q9UI30 125 aaKnown RBP16.28■□□□□ 0.2
UPF1-203ENST00000594504 ATP6V0A2Q9Y487 856 aa16.28■□□□□ 0.2
UPF1-203ENST00000594504 PPIP5K2O43314 1243 aa16.27■□□□□ 0.2
UPF1-203ENST00000594504 SCNN1DP51172 638 aa16.27■□□□□ 0.2
UPF1-203ENST00000594504 CCDC184Q52MB2 194 aa16.27■□□□□ 0.2
UPF1-203ENST00000594504 HSP90AB3PQ58FF7 597 aa16.27■□□□□ 0.2
UPF1-203ENST00000594504 NIM1KQ8IY84 436 aa16.27■□□□□ 0.2
UPF1-203ENST00000594504 TNS4Q8IZW8 715 aa16.27■□□□□ 0.2
UPF1-203ENST00000594504 ANKRD36CQ5JPF3 1778 aa16.27■□□□□ 0.2
UPF1-203ENST00000594504 CNTNAP1P78357 1384 aa16.26■□□□□ 0.19
UPF1-203ENST00000594504 VEGFBP49765 207 aa16.26■□□□□ 0.19
UPF1-203ENST00000594504 GRIPAP1Q4V328 841 aa16.26■□□□□ 0.19
UPF1-203ENST00000594504 HDGFL1Q5TGJ6 251 aa16.26■□□□□ 0.19
UPF1-203ENST00000594504 MRS2Q9HD23 443 aa16.26■□□□□ 0.19
UPF1-203ENST00000594504 ATP5J2-PTCD1G3V325 749 aa16.25■□□□□ 0.19
UPF1-203ENST00000594504 LMOD1P29536 600 aaPredicted RBP16.25■□□□□ 0.19
UPF1-203ENST00000594504 SP8Q8IXZ3 490 aa16.25■□□□□ 0.19
UPF1-203ENST00000594504 TMX4Q9H1E5 349 aaPredicted RBP16.25■□□□□ 0.19
UPF1-203ENST00000594504 SH3TC1Q8TE82 1336 aa16.24■□□□□ 0.19
UPF1-203ENST00000594504 BBOX1O75936 387 aa16.24■□□□□ 0.19
UPF1-203ENST00000594504 CXCL9Q07325 125 aa16.24■□□□□ 0.19
UPF1-203ENST00000594504 RTL5Q5HYW3 569 aaPredicted RBP16.24■□□□□ 0.19
UPF1-203ENST00000594504 DUSP27Q5VZP5 1158 aa16.24■□□□□ 0.19
UPF1-203ENST00000594504 ANKRD13DQ6ZTN6 518 aa16.24■□□□□ 0.19
UPF1-203ENST00000594504 DDX46Q7L014 1031 aaKnown RBP16.24■□□□□ 0.19
UPF1-203ENST00000594504 MPNDQ8N594 471 aa16.24■□□□□ 0.19
UPF1-203ENST00000594504 MBIPQ9NS73 344 aa16.24■□□□□ 0.19
UPF1-203ENST00000594504 FOXN1O15353 648 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms