RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 JDP2Q8WYK2 163 aa19.42■□□□□ 0.7
PNKP-202ENST00000593706 COL4A5P29400 1685 aa19.42■□□□□ 0.7
PNKP-202ENST00000593706 LTBP1Q14766 1721 aa19.42■□□□□ 0.7
PNKP-202ENST00000593706 TAF1P21675 1872 aa19.41■□□□□ 0.7
PNKP-202ENST00000593706 EPHX2P34913 555 aa19.41■□□□□ 0.7
PNKP-202ENST00000593706 PSMD1Q99460 953 aa19.41■□□□□ 0.7
PNKP-202ENST00000593706 UBN2Q6ZU65 1347 aa19.41■□□□□ 0.7
PNKP-202ENST00000593706 PASKQ96RG2 1323 aa19.41■□□□□ 0.7
PNKP-202ENST00000593706 CNTNAP1P78357 1384 aa19.41■□□□□ 0.7
PNKP-202ENST00000593706 GPC2Q8N158 579 aa19.4■□□□□ 0.7
PNKP-202ENST00000593706 TSPYL4Q9UJ04 414 aa19.4■□□□□ 0.7
PNKP-202ENST00000593706 ERBB4Q15303 1308 aa19.4■□□□□ 0.7
PNKP-202ENST00000593706 FZD9O00144 591 aa19.39■□□□□ 0.69
PNKP-202ENST00000593706 CC2D2BQ6DHV5 1058 aa19.39■□□□□ 0.69
PNKP-202ENST00000593706 PNMA8AQ86V59 439 aaPredicted RBP19.39■□□□□ 0.69
PNKP-202ENST00000593706 EIF6P56537 245 aaKnown RBP19.38■□□□□ 0.69
PNKP-202ENST00000593706 SUSD4Q5VX71 490 aa19.38■□□□□ 0.69
PNKP-202ENST00000593706 RBM17Q96I25 401 aaKnown RBP19.38■□□□□ 0.69
PNKP-202ENST00000593706 GJA3Q9Y6H8 435 aa19.38■□□□□ 0.69
PNKP-202ENST00000593706 TMEM88BA6NKF7 163 aa19.37■□□□□ 0.69
PNKP-202ENST00000593706 TCERG1O14776 1098 aaKnown RBP19.37■□□□□ 0.69
PNKP-202ENST00000593706 PPEF1O14829 653 aaPredicted RBP19.37■□□□□ 0.69
PNKP-202ENST00000593706 NTSR2O95665 410 aa19.37■□□□□ 0.69
PNKP-202ENST00000593706 GIGYF2Q6Y7W6 1299 aaKnown RBP19.37■□□□□ 0.69
PNKP-202ENST00000593706 PPP1R42Q7Z4L9 355 aa19.37■□□□□ 0.69
PNKP-202ENST00000593706 LMOD1P29536 600 aaPredicted RBP19.36■□□□□ 0.69
PNKP-202ENST00000593706 HOXA10P31260 410 aaPredicted RBP19.36■□□□□ 0.69
PNKP-202ENST00000593706 DDX10Q13206 875 aaKnown RBP19.36■□□□□ 0.69
PNKP-202ENST00000593706 GRIPAP1Q4V328 841 aa19.36■□□□□ 0.69
PNKP-202ENST00000593706 ZNF34Q8IZ26 560 aa19.36■□□□□ 0.69
PNKP-202ENST00000593706 LARGE2Q8N3Y3 721 aa19.36■□□□□ 0.69
PNKP-202ENST00000593706 TMX4Q9H1E5 349 aaPredicted RBP19.36■□□□□ 0.69
PNKP-202ENST00000593706 DDX60Q8IY21 1712 aaKnown RBP19.36■□□□□ 0.69
PNKP-202ENST00000593706 ITGBL1O95965 494 aaPredicted RBP19.35■□□□□ 0.69
PNKP-202ENST00000593706 EIF2S2P20042 333 aaKnown RBP19.35■□□□□ 0.69
PNKP-202ENST00000593706 PARP10Q53GL7 1025 aa19.35■□□□□ 0.69
PNKP-202ENST00000593706 MAP1SQ66K74 1059 aaPredicted RBP19.35■□□□□ 0.69
PNKP-202ENST00000593706 RIPK4P57078 832 aa19.34■□□□□ 0.69
PNKP-202ENST00000593706 CNTROBQ8N137 903 aa19.34■□□□□ 0.69
PNKP-202ENST00000593706 AIDAQ96BJ3 306 aa19.34■□□□□ 0.69
PNKP-202ENST00000593706 CRAMP1Q96RY5 1269 aa19.34■□□□□ 0.69
PNKP-202ENST00000593706 LMOD3Q0VAK6 560 aa19.33■□□□□ 0.68
PNKP-202ENST00000593706 RALBP1Q15311 655 aa19.33■□□□□ 0.68
PNKP-202ENST00000593706 NLRP3Q96P20 1036 aa19.33■□□□□ 0.68
PNKP-202ENST00000593706 LRRC37AA6NMS7 1700 aa19.33■□□□□ 0.68
PNKP-202ENST00000593706 THSD7BQ9C0I4 1608 aa19.33■□□□□ 0.68
PNKP-202ENST00000593706 VEGFBP49765 207 aa19.32■□□□□ 0.68
PNKP-202ENST00000593706 C3orf67Q6ZVT6 689 aa19.32■□□□□ 0.68
PNKP-202ENST00000593706 SLC51AQ86UW1 340 aa19.32■□□□□ 0.68
PNKP-202ENST00000593706 NIM1KQ8IY84 436 aa19.32■□□□□ 0.68
PNKP-202ENST00000593706 UTP14AQ9BVJ6 771 aaKnown RBP19.32■□□□□ 0.68
PNKP-202ENST00000593706 FOXN1O15353 648 aa19.31■□□□□ 0.68
PNKP-202ENST00000593706 PPIP5K2O43314 1243 aa19.31■□□□□ 0.68
PNKP-202ENST00000593706 ANXA1P04083 346 aa19.31■□□□□ 0.68
PNKP-202ENST00000593706 PROSER3Q2NL68 480 aa19.31■□□□□ 0.68
PNKP-202ENST00000593706 ABT1Q9ULW3 272 aaKnown RBP19.31■□□□□ 0.68
PNKP-202ENST00000593706 ZEB1P37275 1124 aaPredicted RBP19.3■□□□□ 0.68
PNKP-202ENST00000593706 NECTIN2Q92692 538 aa19.3■□□□□ 0.68
PNKP-202ENST00000593706 ABCC4O15439 1325 aa19.29■□□□□ 0.68
PNKP-202ENST00000593706 SCNN1DP51172 638 aa19.29■□□□□ 0.68
PNKP-202ENST00000593706 PDIA6Q15084 440 aa19.29■□□□□ 0.68
PNKP-202ENST00000593706 AOC3Q16853 763 aa19.29■□□□□ 0.68
PNKP-202ENST00000593706 HSP90AB3PQ58FF7 597 aa19.29■□□□□ 0.68
PNKP-202ENST00000593706 LRP10Q7Z4F1 713 aa19.29■□□□□ 0.68
PNKP-202ENST00000593706 BABAM1Q9NWV8 329 aa19.29■□□□□ 0.68
PNKP-202ENST00000593706 RASSF10A6NK89 507 aa19.28■□□□□ 0.68
PNKP-202ENST00000593706 TMPOP42166 694 aaKnown RBP19.28■□□□□ 0.68
PNKP-202ENST00000593706 CTCFP49711 727 aaPredicted RBP19.28■□□□□ 0.68
PNKP-202ENST00000593706 AIMP1Q12904 312 aaKnown RBP19.28■□□□□ 0.68
PNKP-202ENST00000593706 DEFB115Q30KQ5 88 aa19.28■□□□□ 0.68
PNKP-202ENST00000593706 ATP6V0A2Q9Y487 856 aa19.28■□□□□ 0.68
PNKP-202ENST00000593706 MYBBP1AQ9BQG0 1328 aaKnown RBP19.27■□□□□ 0.68
PNKP-202ENST00000593706 EPS15P42566 896 aa19.27■□□□□ 0.68
PNKP-202ENST00000593706 SUPT20HQ8NEM7 779 aa19.27■□□□□ 0.68
PNKP-202ENST00000593706 DDX21Q9NR30 783 aaKnown RBP eCLIP19.27■□□□□ 0.68
PNKP-202ENST00000593706 NEUROD2Q15784 382 aa19.26■□□□□ 0.67
PNKP-202ENST00000593706 PAXIP1Q6ZW49 1069 aaPredicted RBP19.26■□□□□ 0.67
PNKP-202ENST00000593706 USP50Q70EL3 339 aaPredicted RBP19.26■□□□□ 0.67
PNKP-202ENST00000593706 COPS6Q7L5N1 327 aa19.26■□□□□ 0.67
PNKP-202ENST00000593706 CCDC146Q8IYE0 955 aa19.26■□□□□ 0.67
PNKP-202ENST00000593706 XAGE3Q8WTP9 111 aa19.26■□□□□ 0.67
PNKP-202ENST00000593706 PRDM10Q9NQV6 1147 aa19.26■□□□□ 0.67
PNKP-202ENST00000593706 POLR2AP24928 1970 aaKnown RBP19.26■□□□□ 0.67
PNKP-202ENST00000593706 DUOX1Q9NRD9 1551 aa19.25■□□□□ 0.67
PNKP-202ENST00000593706 HCLS1P14317 486 aaPredicted RBP19.25■□□□□ 0.67
PNKP-202ENST00000593706 SLC10A5Q5PT55 438 aa19.25■□□□□ 0.67
PNKP-202ENST00000593706 DPP8Q6V1X1 898 aaPredicted RBP19.25■□□□□ 0.67
PNKP-202ENST00000593706 NLRP10Q86W26 655 aa19.25■□□□□ 0.67
PNKP-202ENST00000593706 TRMT112Q9UI30 125 aaKnown RBP19.25■□□□□ 0.67
PNKP-202ENST00000593706 LAS1LQ9Y4W2 734 aaKnown RBP19.25■□□□□ 0.67
PNKP-202ENST00000593706 WDR33Q9C0J8 1336 aaKnown RBP19.25■□□□□ 0.67
PNKP-202ENST00000593706 DDX46Q7L014 1031 aaKnown RBP19.24■□□□□ 0.67
PNKP-202ENST00000593706 VPS33BQ9H267 617 aa19.24■□□□□ 0.67
PNKP-202ENST00000593706 WBP1LQ9NX94 342 aa19.24■□□□□ 0.67
PNKP-202ENST00000593706 SH3TC1Q8TE82 1336 aa19.24■□□□□ 0.67
PNKP-202ENST00000593706 WDR43Q15061 677 aaKnown RBP eCLIP19.23■□□□□ 0.67
PNKP-202ENST00000593706 MPNDQ8N594 471 aa19.23■□□□□ 0.67
PNKP-202ENST00000593706 ADARB2Q9NS39 739 aaKnown RBP19.23■□□□□ 0.67
PNKP-202ENST00000593706 GPRC5DQ9NZD1 345 aa19.23■□□□□ 0.67
PNKP-202ENST00000593706 ZNRF3Q9ULT6 936 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms