RNA–Protein interactions for RNA: ENST00000593251.5

RETREG3-212, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-212ENST00000593251 ITGBL1O95965 494 aaPredicted RBP23.08■■□□□ 1.29
RETREG3-212ENST00000593251 EPHX2P34913 555 aa23.08■■□□□ 1.29
RETREG3-212ENST00000593251 CNTNAP1P78357 1384 aa23.08■■□□□ 1.29
RETREG3-212ENST00000593251 TCERG1O14776 1098 aaKnown RBP23.07■■□□□ 1.28
RETREG3-212ENST00000593251 PSMD1Q99460 953 aa23.07■■□□□ 1.28
RETREG3-212ENST00000593251 LTBP1Q14766 1721 aa23.06■■□□□ 1.28
RETREG3-212ENST00000593251 ZNF34Q8IZ26 560 aa23.06■■□□□ 1.28
RETREG3-212ENST00000593251 JDP2Q8WYK2 163 aa23.06■■□□□ 1.28
RETREG3-212ENST00000593251 ANKRD36CQ5JPF3 1778 aa23.06■■□□□ 1.28
RETREG3-212ENST00000593251 RIC1Q4ADV7 1423 aa23.06■■□□□ 1.28
RETREG3-212ENST00000593251 IBTKQ9P2D0 1353 aaPredicted RBP23.05■■□□□ 1.28
RETREG3-212ENST00000593251 LAMB2P55268 1798 aa23.05■■□□□ 1.28
RETREG3-212ENST00000593251 NTSR2O95665 410 aa23.05■■□□□ 1.28
RETREG3-212ENST00000593251 MAP1SQ66K74 1059 aaPredicted RBP23.05■■□□□ 1.28
RETREG3-212ENST00000593251 C3orf67Q6ZVT6 689 aa23.05■■□□□ 1.28
RETREG3-212ENST00000593251 GPC2Q8N158 579 aa23.05■■□□□ 1.28
RETREG3-212ENST00000593251 GJA3Q9Y6H8 435 aa23.05■■□□□ 1.28
RETREG3-212ENST00000593251 TMEM88BA6NKF7 163 aa23.04■■□□□ 1.28
RETREG3-212ENST00000593251 HOXA10P31260 410 aaPredicted RBP23.04■■□□□ 1.28
RETREG3-212ENST00000593251 GIGYF2Q6Y7W6 1299 aaKnown RBP23.04■■□□□ 1.28
RETREG3-212ENST00000593251 TSPYL4Q9UJ04 414 aa23.04■■□□□ 1.28
RETREG3-212ENST00000593251 EIF2S2P20042 333 aaKnown RBP23.03■■□□□ 1.28
RETREG3-212ENST00000593251 CC2D2BQ6DHV5 1058 aa23.03■■□□□ 1.28
RETREG3-212ENST00000593251 RBM17Q96I25 401 aaKnown RBP23.03■■□□□ 1.28
RETREG3-212ENST00000593251 PNNQ9H307 717 aaKnown RBP23.03■■□□□ 1.28
RETREG3-212ENST00000593251 PPEF1O14829 653 aaPredicted RBP23.02■■□□□ 1.28
RETREG3-212ENST00000593251 FOXN1O15353 648 aa23.02■■□□□ 1.28
RETREG3-212ENST00000593251 ANXA1P04083 346 aa23.02■■□□□ 1.28
RETREG3-212ENST00000593251 VEGFBP49765 207 aa23.02■■□□□ 1.28
RETREG3-212ENST00000593251 EIF6P56537 245 aaKnown RBP23.02■■□□□ 1.28
RETREG3-212ENST00000593251 PNMA8AQ86V59 439 aaPredicted RBP23.02■■□□□ 1.28
RETREG3-212ENST00000593251 ERBB4Q15303 1308 aa23.02■■□□□ 1.28
RETREG3-212ENST00000593251 RIPK4P57078 832 aa23.01■■□□□ 1.27
RETREG3-212ENST00000593251 PDIA6Q15084 440 aa23.01■■□□□ 1.27
RETREG3-212ENST00000593251 PROSER3Q2NL68 480 aa23.01■■□□□ 1.27
RETREG3-212ENST00000593251 LRP10Q7Z4F1 713 aa23.01■■□□□ 1.27
RETREG3-212ENST00000593251 CNTROBQ8N137 903 aa23.01■■□□□ 1.27
RETREG3-212ENST00000593251 LARGE2Q8N3Y3 721 aa23.01■■□□□ 1.27
RETREG3-212ENST00000593251 CRAMP1Q96RY5 1269 aa23.01■■□□□ 1.27
RETREG3-212ENST00000593251 PPP1R42Q7Z4L9 355 aa23■■□□□ 1.27
RETREG3-212ENST00000593251 TAF1P21675 1872 aa23■■□□□ 1.27
RETREG3-212ENST00000593251 NECTIN2Q92692 538 aa22.99■■□□□ 1.27
RETREG3-212ENST00000593251 PARP10Q53GL7 1025 aa22.98■■□□□ 1.27
RETREG3-212ENST00000593251 NLRP3Q96P20 1036 aa22.98■■□□□ 1.27
RETREG3-212ENST00000593251 TRPM7Q96QT4 1865 aa22.98■■□□□ 1.27
RETREG3-212ENST00000593251 LMOD1P29536 600 aaPredicted RBP22.97■■□□□ 1.27
RETREG3-212ENST00000593251 EPS15P42566 896 aa22.97■■□□□ 1.27
RETREG3-212ENST00000593251 SCNN1DP51172 638 aa22.97■■□□□ 1.27
RETREG3-212ENST00000593251 UTP14AQ9BVJ6 771 aaKnown RBP22.97■■□□□ 1.27
RETREG3-212ENST00000593251 FMR1Q06787 632 aaKnown RBP eCLIP22.96■■□□□ 1.27
RETREG3-212ENST00000593251 GRIPAP1Q4V328 841 aa22.96■■□□□ 1.27
RETREG3-212ENST00000593251 ABCC4O15439 1325 aa22.95■■□□□ 1.26
RETREG3-212ENST00000593251 PPIP5K2O43314 1243 aa22.95■■□□□ 1.26
RETREG3-212ENST00000593251 AIMP1Q12904 312 aaKnown RBP22.95■■□□□ 1.26
RETREG3-212ENST00000593251 AOC3Q16853 763 aa22.95■■□□□ 1.26
RETREG3-212ENST00000593251 DEFB115Q30KQ5 88 aa22.95■■□□□ 1.26
RETREG3-212ENST00000593251 NIM1KQ8IY84 436 aa22.95■■□□□ 1.26
RETREG3-212ENST00000593251 TMPOP42166 694 aaKnown RBP22.94■■□□□ 1.26
RETREG3-212ENST00000593251 AIDAQ96BJ3 306 aa22.94■■□□□ 1.26
RETREG3-212ENST00000593251 ABT1Q9ULW3 272 aaKnown RBP22.94■■□□□ 1.26
RETREG3-212ENST00000593251 ATP6V0A2Q9Y487 856 aa22.94■■□□□ 1.26
RETREG3-212ENST00000593251 RASSF10A6NK89 507 aa22.93■■□□□ 1.26
RETREG3-212ENST00000593251 NEUROD2Q15784 382 aa22.93■■□□□ 1.26
RETREG3-212ENST00000593251 SLC10A5Q5PT55 438 aa22.93■■□□□ 1.26
RETREG3-212ENST00000593251 COPS6Q7L5N1 327 aa22.93■■□□□ 1.26
RETREG3-212ENST00000593251 CCDC146Q8IYE0 955 aa22.93■■□□□ 1.26
RETREG3-212ENST00000593251 XAGE3Q8WTP9 111 aa22.93■■□□□ 1.26
RETREG3-212ENST00000593251 ZNF428Q96B54 188 aa22.93■■□□□ 1.26
RETREG3-212ENST00000593251 DDX21Q9NR30 783 aaKnown RBP eCLIP22.93■■□□□ 1.26
RETREG3-212ENST00000593251 HCLS1P14317 486 aaPredicted RBP22.92■■□□□ 1.26
RETREG3-212ENST00000593251 KRT24Q2M2I5 525 aa22.92■■□□□ 1.26
RETREG3-212ENST00000593251 TMX4Q9H1E5 349 aaPredicted RBP22.92■■□□□ 1.26
RETREG3-212ENST00000593251 CTCFP49711 727 aaPredicted RBP22.91■■□□□ 1.26
RETREG3-212ENST00000593251 NLRP10Q86W26 655 aa22.91■■□□□ 1.26
RETREG3-212ENST00000593251 BABAM1Q9NWV8 329 aa22.91■■□□□ 1.26
RETREG3-212ENST00000593251 WBP1LQ9NX94 342 aa22.91■■□□□ 1.26
RETREG3-212ENST00000593251 DDX60Q8IY21 1712 aaKnown RBP22.91■■□□□ 1.26
RETREG3-212ENST00000593251 WDR33Q9C0J8 1336 aaKnown RBP22.9■■□□□ 1.26
RETREG3-212ENST00000593251 LMOD3Q0VAK6 560 aa22.9■■□□□ 1.26
RETREG3-212ENST00000593251 RALBP1Q15311 655 aa22.9■■□□□ 1.26
RETREG3-212ENST00000593251 PRDM10Q9NQV6 1147 aa22.9■■□□□ 1.26
RETREG3-212ENST00000593251 TRAF5O00463 557 aa22.89■■□□□ 1.25
RETREG3-212ENST00000593251 LBX1P52954 281 aa22.89■■□□□ 1.25
RETREG3-212ENST00000593251 USP50Q70EL3 339 aaPredicted RBP22.89■■□□□ 1.25
RETREG3-212ENST00000593251 LAS1LQ9Y4W2 734 aaKnown RBP22.89■■□□□ 1.25
RETREG3-212ENST00000593251 CXCL9Q07325 125 aa22.88■■□□□ 1.25
RETREG3-212ENST00000593251 TCIRG1Q13488 830 aa22.88■■□□□ 1.25
RETREG3-212ENST00000593251 HSP90AB3PQ58FF7 597 aa22.88■■□□□ 1.25
RETREG3-212ENST00000593251 DPP8Q6V1X1 898 aaPredicted RBP22.88■■□□□ 1.25
RETREG3-212ENST00000593251 TRMT112Q9UI30 125 aaKnown RBP22.88■■□□□ 1.25
RETREG3-212ENST00000593251 PAXIP1Q6ZW49 1069 aaPredicted RBP22.87■■□□□ 1.25
RETREG3-212ENST00000593251 SP8Q8IXZ3 490 aa22.87■■□□□ 1.25
RETREG3-212ENST00000593251 MPNDQ8N594 471 aa22.87■■□□□ 1.25
RETREG3-212ENST00000593251 SUPT20HQ8NEM7 779 aa22.87■■□□□ 1.25
RETREG3-212ENST00000593251 RTFDC1Q9BY42 306 aaPredicted RBP22.87■■□□□ 1.25
RETREG3-212ENST00000593251 GPRC5DQ9NZD1 345 aa22.87■■□□□ 1.25
RETREG3-212ENST00000593251 ZNRF3Q9ULT6 936 aa22.87■■□□□ 1.25
RETREG3-212ENST00000593251 THSD7BQ9C0I4 1608 aa22.86■■□□□ 1.25
RETREG3-212ENST00000593251 BBOX1O75936 387 aa22.86■■□□□ 1.25
RETREG3-212ENST00000593251 GRM1Q13255 1194 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms