RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 FBXO22Q8NEZ5 403 aa5.69□□□□□ -1.5
LIG3-211ENST00000588713 ZNF296Q8WUU4 475 aaPredicted RBP5.69□□□□□ -1.5
LIG3-211ENST00000588713 RNF166Q96A37 237 aaPredicted RBP5.69□□□□□ -1.5
LIG3-211ENST00000588713 STXBP5LQ9Y2K9 1186 aa5.69□□□□□ -1.5
LIG3-211ENST00000588713 GJA3Q9Y6H8 435 aa5.69□□□□□ -1.5
LIG3-211ENST00000588713 DICER1Q9UPY3 1922 aaKnown RBP5.69□□□□□ -1.5
LIG3-211ENST00000588713 SCN11AQ9UI33 1791 aa5.69□□□□□ -1.5
LIG3-211ENST00000588713 ERBB4Q15303 1308 aa5.69□□□□□ -1.5
LIG3-211ENST00000588713 FANCIQ9NVI1 1328 aa5.69□□□□□ -1.5
LIG3-211ENST00000588713 USP31Q70CQ4 1352 aa5.68□□□□□ -1.5
LIG3-211ENST00000588713 CCER2I3L3R5 266 aa5.68□□□□□ -1.5
LIG3-211ENST00000588713 USHBP1Q8N6Y0 703 aa5.68□□□□□ -1.5
LIG3-211ENST00000588713 MFRPQ9BY79 579 aa5.68□□□□□ -1.5
LIG3-211ENST00000588713 GLIS2Q9BZE0 524 aaPredicted RBP5.68□□□□□ -1.5
LIG3-211ENST00000588713 ASAP1Q9ULH1 1129 aa5.68□□□□□ -1.5
LIG3-211ENST00000588713 LTBP3Q9NS15 1303 aa5.68□□□□□ -1.5
LIG3-211ENST00000588713 RAB3GAP2Q9H2M9 1393 aa5.67□□□□□ -1.5
LIG3-211ENST00000588713 TRPM7Q96QT4 1865 aa5.67□□□□□ -1.5
LIG3-211ENST00000588713 VCANP13611 3396 aa5.67□□□□□ -1.5
LIG3-211ENST00000588713 EPS15P42566 896 aa5.67□□□□□ -1.5
LIG3-211ENST00000588713 INTS3Q68E01 1043 aaKnown RBP5.67□□□□□ -1.5
LIG3-211ENST00000588713 ANKRD13DQ6ZTN6 518 aa5.67□□□□□ -1.5
LIG3-211ENST00000588713 KHSRPQ92945 711 aaKnown RBP eCLIP5.67□□□□□ -1.5
LIG3-211ENST00000588713 ZNF277Q9NRM2 450 aaPredicted RBP5.67□□□□□ -1.5
LIG3-211ENST00000588713 PCDH11XQ9BZA7 1347 aa5.67□□□□□ -1.5
LIG3-211ENST00000588713 PCDH11YQ9BZA8 1340 aa5.67□□□□□ -1.5
LIG3-211ENST00000588713 USP42Q9H9J4 1324 aaKnown RBP5.67□□□□□ -1.5
LIG3-211ENST00000588713 PAPPA2Q9BXP8 1791 aa5.67□□□□□ -1.5
LIG3-211ENST00000588713 CARMIL3Q8ND23 1372 aa5.67□□□□□ -1.5
LIG3-211ENST00000588713 CACNA1AO00555 2505 aa5.66□□□□□ -1.5
LIG3-211ENST00000588713 C2orf72A6NCS6 295 aa5.66□□□□□ -1.5
LIG3-211ENST00000588713 FAM155AB1AL88 458 aaPredicted RBP5.66□□□□□ -1.5
LIG3-211ENST00000588713 RPS6KA4O75676 772 aa5.66□□□□□ -1.5
LIG3-211ENST00000588713 TBC1D8O95759 1140 aa5.66□□□□□ -1.5
LIG3-211ENST00000588713 RGMBQ6NW40 437 aa5.66□□□□□ -1.5
LIG3-211ENST00000588713 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.66□□□□□ -1.5
LIG3-211ENST00000588713 GPC2Q8N158 579 aa5.66□□□□□ -1.5
LIG3-211ENST00000588713 RAPGEF4Q8WZA2 1011 aa5.66□□□□□ -1.5
LIG3-211ENST00000588713 DPF3Q92784 378 aa5.66□□□□□ -1.5
LIG3-211ENST00000588713 TMOD3Q9NYL9 352 aa5.66□□□□□ -1.5
LIG3-211ENST00000588713 TIMELESSQ9UNS1 1208 aa5.66□□□□□ -1.5
LIG3-211ENST00000588713 MAP2P11137 1827 aaKnown RBP5.66□□□□□ -1.5
LIG3-211ENST00000588713 INSRP06213 1382 aa5.66□□□□□ -1.5
LIG3-211ENST00000588713 SMG6Q86US8 1419 aaKnown RBP5.65□□□□□ -1.5
LIG3-211ENST00000588713 LTN1O94822 1766 aa5.65□□□□□ -1.5
LIG3-211ENST00000588713 DLEC1Q9Y238 1755 aa5.65□□□□□ -1.5
LIG3-211ENST00000588713 FER1L6Q2WGJ9 1857 aa5.65□□□□□ -1.5
LIG3-211ENST00000588713 TM4SF1P30408 202 aa5.65□□□□□ -1.5
LIG3-211ENST00000588713 ZNF157P51786 506 aaPredicted RBP5.65□□□□□ -1.5
LIG3-211ENST00000588713 MAP3K12Q12852 859 aa5.65□□□□□ -1.5
LIG3-211ENST00000588713 CSRNP1Q96S65 589 aa5.65□□□□□ -1.5
LIG3-211ENST00000588713 KDM2AQ9Y2K7 1162 aa5.65□□□□□ -1.5
LIG3-211ENST00000588713 RBM19Q9Y4C8 960 aaKnown RBP5.65□□□□□ -1.5
LIG3-211ENST00000588713 TTC21AQ8NDW8 1320 aa5.65□□□□□ -1.51
LIG3-211ENST00000588713 CNTNAP4Q9C0A0 1308 aa5.65□□□□□ -1.51
LIG3-211ENST00000588713 LAMB4A4D0S4 1761 aa5.65□□□□□ -1.51
LIG3-211ENST00000588713 FAM208AQ9UK61 1670 aaKnown RBP5.64□□□□□ -1.51
LIG3-211ENST00000588713 CYP27B1O15528 508 aa5.64□□□□□ -1.51
LIG3-211ENST00000588713 ZPR1O75312 459 aa5.64□□□□□ -1.51
LIG3-211ENST00000588713 SERPINB2P05120 415 aa5.64□□□□□ -1.51
LIG3-211ENST00000588713 TATP17735 454 aaPredicted RBP5.64□□□□□ -1.51
LIG3-211ENST00000588713 NFIXQ14938 502 aa5.64□□□□□ -1.51
LIG3-211ENST00000588713 ERICH6BQ5W0A0 696 aa5.64□□□□□ -1.51
LIG3-211ENST00000588713 USPL1Q5W0Q7 1092 aa5.64□□□□□ -1.51
LIG3-211ENST00000588713 USP50Q70EL3 339 aaPredicted RBP5.64□□□□□ -1.51
LIG3-211ENST00000588713 TMC2Q8TDI7 906 aa5.64□□□□□ -1.51
LIG3-211ENST00000588713 CCDC102AQ96A19 550 aa5.64□□□□□ -1.51
LIG3-211ENST00000588713 ATG3Q9NT62 314 aa5.64□□□□□ -1.51
LIG3-211ENST00000588713 TRIM17Q9Y577 477 aa5.64□□□□□ -1.51
LIG3-211ENST00000588713 BRCA2P51587 3418 aa5.64□□□□□ -1.51
LIG3-211ENST00000588713 RANBP2P49792 3224 aaKnown RBP5.63□□□□□ -1.51
LIG3-211ENST00000588713 ITGB4P16144 1822 aa5.63□□□□□ -1.51
LIG3-211ENST00000588713 GPR25O00155 361 aa5.63□□□□□ -1.51
LIG3-211ENST00000588713 RGL2O15211 777 aa5.63□□□□□ -1.51
LIG3-211ENST00000588713 MYCP01106 439 aaPredicted RBP5.63□□□□□ -1.51
LIG3-211ENST00000588713 NUDT7P0C024 238 aa5.63□□□□□ -1.51
LIG3-211ENST00000588713 SCNN1DP51172 638 aa5.63□□□□□ -1.51
LIG3-211ENST00000588713 EIF6P56537 245 aaKnown RBP5.63□□□□□ -1.51
LIG3-211ENST00000588713 RC3H1Q5TC82 1133 aaKnown RBP5.63□□□□□ -1.51
LIG3-211ENST00000588713 SOGA3Q5TF21 947 aa5.63□□□□□ -1.51
LIG3-211ENST00000588713 PRPF40BQ6NWY9 871 aaKnown RBP5.63□□□□□ -1.51
LIG3-211ENST00000588713 DLK2Q6UY11 383 aa5.63□□□□□ -1.51
LIG3-211ENST00000588713 NME9Q86XW9 330 aa5.63□□□□□ -1.51
LIG3-211ENST00000588713 IP6K1Q92551 441 aa5.63□□□□□ -1.51
LIG3-211ENST00000588713 SLC4A9Q96Q91 983 aa5.63□□□□□ -1.51
LIG3-211ENST00000588713 MTMR10Q9NXD2 777 aa5.63□□□□□ -1.51
LIG3-211ENST00000588713 KDRP35968 1356 aa5.63□□□□□ -1.51
LIG3-211ENST00000588713 SPTBN5Q9NRC6 3674 aaKnown RBP5.63□□□□□ -1.51
LIG3-211ENST00000588713 CD163L1Q9NR16 1453 aa5.63□□□□□ -1.51
LIG3-211ENST00000588713 FZD9O00144 591 aa5.62□□□□□ -1.51
LIG3-211ENST00000588713 TNFRSF10AO00220 468 aa5.62□□□□□ -1.51
LIG3-211ENST00000588713 FKTNO75072 461 aa5.62□□□□□ -1.51
LIG3-211ENST00000588713 FKBP4Q02790 459 aaKnown RBP eCLIP5.62□□□□□ -1.51
LIG3-211ENST00000588713 SLC4A8Q2Y0W8 1093 aa5.62□□□□□ -1.51
LIG3-211ENST00000588713 CCDC93Q567U6 631 aa5.62□□□□□ -1.51
LIG3-211ENST00000588713 NBPF6Q5VWK0 638 aa5.62□□□□□ -1.51
LIG3-211ENST00000588713 ALYREFQ86V81 257 aaKnown RBP5.62□□□□□ -1.51
LIG3-211ENST00000588713 NBPF4Q96M43 638 aa5.62□□□□□ -1.51
LIG3-211ENST00000588713 PRO3102Q9H379 93 aa5.62□□□□□ -1.51
LIG3-211ENST00000588713 CGNL1Q0VF96 1302 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms