RNA–Protein interactions for RNA: ENST00000585428.1

SDF2-202, Transcript of stromal cell derived factor 2, humanhuman

TSL 1 (best)

Gene SDF2, Length 924 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-202ENST00000585428 CNTNAP1P78357 1384 aa19.13■□□□□ 0.65
SDF2-202ENST00000585428 ABCC12Q96J65 1359 aa19.13■□□□□ 0.65
SDF2-202ENST00000585428 PDIA6Q15084 440 aa19.12■□□□□ 0.65
SDF2-202ENST00000585428 EAPPQ56P03 285 aaPredicted RBP19.12■□□□□ 0.65
SDF2-202ENST00000585428 JDP2Q8WYK2 163 aa19.12■□□□□ 0.65
SDF2-202ENST00000585428 CRAMP1Q96RY5 1269 aa19.12■□□□□ 0.65
SDF2-202ENST00000585428 ZBTB3Q9H5J0 574 aa19.12■□□□□ 0.65
SDF2-202ENST00000585428 GPTP24298 496 aa19.11■□□□□ 0.65
SDF2-202ENST00000585428 CNTROBQ8N137 903 aa19.11■□□□□ 0.65
SDF2-202ENST00000585428 RPGRQ92834 1020 aaKnown RBP19.11■□□□□ 0.65
SDF2-202ENST00000585428 CLEC11AQ9Y240 323 aa19.11■□□□□ 0.65
SDF2-202ENST00000585428 IBTKQ9P2D0 1353 aaPredicted RBP19.1■□□□□ 0.65
SDF2-202ENST00000585428 ERBB4Q15303 1308 aa19.1■□□□□ 0.65
SDF2-202ENST00000585428 RNF123Q5XPI4 1314 aa19.1■□□□□ 0.65
SDF2-202ENST00000585428 CAPN15O75808 1086 aa19.1■□□□□ 0.65
SDF2-202ENST00000585428 NTSR2O95665 410 aa19.1■□□□□ 0.65
SDF2-202ENST00000585428 VEGFBP49765 207 aa19.1■□□□□ 0.65
SDF2-202ENST00000585428 SLC10A5Q5PT55 438 aa19.1■□□□□ 0.65
SDF2-202ENST00000585428 RIC1Q4ADV7 1423 aa19.09■□□□□ 0.65
SDF2-202ENST00000585428 SCN4AP35499 1836 aa19.09■□□□□ 0.65
SDF2-202ENST00000585428 C3orf67Q6ZVT6 689 aa19.09■□□□□ 0.65
SDF2-202ENST00000585428 RBM17Q96I25 401 aaKnown RBP19.09■□□□□ 0.65
SDF2-202ENST00000585428 FOXN1O15353 648 aa19.08■□□□□ 0.64
SDF2-202ENST00000585428 MAP1SQ66K74 1059 aaPredicted RBP19.08■□□□□ 0.64
SDF2-202ENST00000585428 PPP1R42Q7Z4L9 355 aa19.08■□□□□ 0.64
SDF2-202ENST00000585428 BABAM1Q9NWV8 329 aa19.08■□□□□ 0.64
SDF2-202ENST00000585428 EIF6P56537 245 aaKnown RBP19.07■□□□□ 0.64
SDF2-202ENST00000585428 PARP10Q53GL7 1025 aa19.07■□□□□ 0.64
SDF2-202ENST00000585428 SLC51AQ86UW1 340 aa19.07■□□□□ 0.64
SDF2-202ENST00000585428 NLRP3Q96P20 1036 aa19.07■□□□□ 0.64
SDF2-202ENST00000585428 TSPYL4Q9UJ04 414 aa19.07■□□□□ 0.64
SDF2-202ENST00000585428 CACNA1SQ13698 1873 aa19.07■□□□□ 0.64
SDF2-202ENST00000585428 RIPK4P57078 832 aa19.06■□□□□ 0.64
SDF2-202ENST00000585428 DEFB115Q30KQ5 88 aa19.06■□□□□ 0.64
SDF2-202ENST00000585428 VPS33BQ9H267 617 aa19.06■□□□□ 0.64
SDF2-202ENST00000585428 WBP1LQ9NX94 342 aa19.06■□□□□ 0.64
SDF2-202ENST00000585428 MAPK8IP3Q9UPT6 1336 aa19.05■□□□□ 0.64
SDF2-202ENST00000585428 RASSF10A6NK89 507 aa19.05■□□□□ 0.64
SDF2-202ENST00000585428 PPEF1O14829 653 aaPredicted RBP19.05■□□□□ 0.64
SDF2-202ENST00000585428 EIF2S2P20042 333 aaKnown RBP19.05■□□□□ 0.64
SDF2-202ENST00000585428 EPS15P42566 896 aa19.05■□□□□ 0.64
SDF2-202ENST00000585428 SCNN1DP51172 638 aa19.05■□□□□ 0.64
SDF2-202ENST00000585428 LARGE2Q8N3Y3 721 aa19.05■□□□□ 0.64
SDF2-202ENST00000585428 UTP14AQ9BVJ6 771 aaKnown RBP19.05■□□□□ 0.64
SDF2-202ENST00000585428 PRDM10Q9NQV6 1147 aa19.05■□□□□ 0.64
SDF2-202ENST00000585428 ATP6V0A2Q9Y487 856 aa19.05■□□□□ 0.64
SDF2-202ENST00000585428 GJA3Q9Y6H8 435 aa19.05■□□□□ 0.64
SDF2-202ENST00000585428 COL4A5P29400 1685 aa19.05■□□□□ 0.64
SDF2-202ENST00000585428 KDM3BQ7LBC6 1761 aa19.04■□□□□ 0.64
SDF2-202ENST00000585428 TCERG1O14776 1098 aaKnown RBP19.04■□□□□ 0.64
SDF2-202ENST00000585428 PROSER3Q2NL68 480 aa19.04■□□□□ 0.64
SDF2-202ENST00000585428 ADAMTSL1Q8N6G6 1762 aa19.04■□□□□ 0.64
SDF2-202ENST00000585428 TMPOP42166 694 aaKnown RBP19.03■□□□□ 0.64
SDF2-202ENST00000585428 CNKSR2Q8WXI2 1034 aa19.03■□□□□ 0.64
SDF2-202ENST00000585428 RTFDC1Q9BY42 306 aaPredicted RBP19.03■□□□□ 0.64
SDF2-202ENST00000585428 DDX21Q9NR30 783 aaKnown RBP eCLIP19.03■□□□□ 0.64
SDF2-202ENST00000585428 NUP98P52948 1817 aa19.02■□□□□ 0.64
SDF2-202ENST00000585428 LAMB4A4D0S4 1761 aa19.02■□□□□ 0.64
SDF2-202ENST00000585428 BBOX1O75936 387 aa19.02■□□□□ 0.64
SDF2-202ENST00000585428 ANXA1P04083 346 aa19.02■□□□□ 0.64
SDF2-202ENST00000585428 USP50Q70EL3 339 aaPredicted RBP19.02■□□□□ 0.64
SDF2-202ENST00000585428 COPS6Q7L5N1 327 aa19.02■□□□□ 0.64
SDF2-202ENST00000585428 DLG5Q8TDM6 1919 aa19.02■□□□□ 0.63
SDF2-202ENST00000585428 LMOD1P29536 600 aaPredicted RBP19.01■□□□□ 0.63
SDF2-202ENST00000585428 CTCFP49711 727 aaPredicted RBP19.01■□□□□ 0.63
SDF2-202ENST00000585428 RALBP1Q15311 655 aa19.01■□□□□ 0.63
SDF2-202ENST00000585428 CHL1O00533 1208 aa19■□□□□ 0.63
SDF2-202ENST00000585428 FMR1Q06787 632 aaKnown RBP eCLIP19■□□□□ 0.632e-9■■■■■ 60.2
SDF2-202ENST00000585428 TCIRG1Q13488 830 aa19■□□□□ 0.63
SDF2-202ENST00000585428 CST9Q5W186 159 aa19■□□□□ 0.63
SDF2-202ENST00000585428 NLRP10Q86W26 655 aa19■□□□□ 0.63
SDF2-202ENST00000585428 SP8Q8IXZ3 490 aa19■□□□□ 0.63
SDF2-202ENST00000585428 NIM1KQ8IY84 436 aa19■□□□□ 0.63
SDF2-202ENST00000585428 WDR33Q9C0J8 1336 aaKnown RBP19■□□□□ 0.63
SDF2-202ENST00000585428 PPIP5K2O43314 1243 aa18.99■□□□□ 0.63
SDF2-202ENST00000585428 CXCL9Q07325 125 aa18.99■□□□□ 0.63
SDF2-202ENST00000585428 AOC3Q16853 763 aa18.99■□□□□ 0.63
SDF2-202ENST00000585428 XAGE3Q8WTP9 111 aa18.99■□□□□ 0.63
SDF2-202ENST00000585428 AIDAQ96BJ3 306 aa18.99■□□□□ 0.63
SDF2-202ENST00000585428 TMX4Q9H1E5 349 aaPredicted RBP18.99■□□□□ 0.63
SDF2-202ENST00000585428 ZNRF3Q9ULT6 936 aa18.99■□□□□ 0.63
SDF2-202ENST00000585428 ABCC4O15439 1325 aa18.99■□□□□ 0.63
SDF2-202ENST00000585428 LMOD3Q0VAK6 560 aa18.98■□□□□ 0.63
SDF2-202ENST00000585428 AIMP1Q12904 312 aaKnown RBP18.98■□□□□ 0.63
SDF2-202ENST00000585428 HSP90AB3PQ58FF7 597 aa18.98■□□□□ 0.63
SDF2-202ENST00000585428 SUPT20HQ8NEM7 779 aa18.98■□□□□ 0.63
SDF2-202ENST00000585428 GPRC5DQ9NZD1 345 aa18.98■□□□□ 0.63
SDF2-202ENST00000585428 HCLS1P14317 486 aaPredicted RBP18.97■□□□□ 0.63
SDF2-202ENST00000585428 LBX1P52954 281 aa18.97■□□□□ 0.63
SDF2-202ENST00000585428 MAP2K1Q02750 393 aaPredicted RBP18.97■□□□□ 0.63
SDF2-202ENST00000585428 NECTIN2Q92692 538 aa18.97■□□□□ 0.63
SDF2-202ENST00000585428 PGAP2Q9UHJ9 254 aa18.97■□□□□ 0.63
SDF2-202ENST00000585428 ABT1Q9ULW3 272 aaKnown RBP18.97■□□□□ 0.63
SDF2-202ENST00000585428 MPNDQ8N594 471 aa18.96■□□□□ 0.63
SDF2-202ENST00000585428 ADARB2Q9NS39 739 aaKnown RBP18.96■□□□□ 0.63
SDF2-202ENST00000585428 TRIM35Q9UPQ4 493 aa18.96■□□□□ 0.63
SDF2-202ENST00000585428 LTBP1Q14766 1721 aa18.96■□□□□ 0.63
SDF2-202ENST00000585428 TRAF5O00463 557 aa18.95■□□□□ 0.62
SDF2-202ENST00000585428 KIAA2012Q0VF49 1180 aa18.95■□□□□ 0.62
SDF2-202ENST00000585428 KRT24Q2M2I5 525 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 154 ms