RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 MYL6BP14649 208 aa13.98□□□□□ -0.17
RFFL-209ENST00000581265 HOXA10P31260 410 aaPredicted RBP13.98□□□□□ -0.17
RFFL-209ENST00000581265 CC2D2BQ6DHV5 1058 aa13.98□□□□□ -0.17
RFFL-209ENST00000581265 KIF6Q6ZMV9 814 aa13.98□□□□□ -0.17
RFFL-209ENST00000581265 NUTM1Q86Y26 1132 aa13.98□□□□□ -0.17
RFFL-209ENST00000581265 ZNF34Q8IZ26 560 aa13.98□□□□□ -0.17
RFFL-209ENST00000581265 TAF1DQ9H5J8 278 aaPredicted RBP13.98□□□□□ -0.17
RFFL-209ENST00000581265 FZD9O00144 591 aa13.97□□□□□ -0.17
RFFL-209ENST00000581265 GRM1Q13255 1194 aa13.97□□□□□ -0.17
RFFL-209ENST00000581265 SYNE4Q8N205 404 aa13.97□□□□□ -0.17
RFFL-209ENST00000581265 PSMD1Q99460 953 aa13.97□□□□□ -0.17
RFFL-209ENST00000581265 BABAM1Q9NWV8 329 aa13.97□□□□□ -0.17
RFFL-209ENST00000581265 DLG5Q8TDM6 1919 aa13.97□□□□□ -0.17
RFFL-209ENST00000581265 KDM3BQ7LBC6 1761 aa13.96□□□□□ -0.17
RFFL-209ENST00000581265 UBN2Q6ZU65 1347 aa13.96□□□□□ -0.17
RFFL-209ENST00000581265 CACNA1SQ13698 1873 aa13.96□□□□□ -0.17
RFFL-209ENST00000581265 RASSF10A6NK89 507 aa13.96□□□□□ -0.17
RFFL-209ENST00000581265 ITGBL1O95965 494 aaPredicted RBP13.96□□□□□ -0.17
RFFL-209ENST00000581265 GPTP24298 496 aa13.96□□□□□ -0.17
RFFL-209ENST00000581265 IARSP41252 1262 aaKnown RBP13.96□□□□□ -0.17
RFFL-209ENST00000581265 RIPK4P57078 832 aa13.96□□□□□ -0.17
RFFL-209ENST00000581265 RALBP1Q15311 655 aa13.96□□□□□ -0.17
RFFL-209ENST00000581265 GRIPAP1Q4V328 841 aa13.96□□□□□ -0.17
RFFL-209ENST00000581265 SUSD4Q5VX71 490 aa13.96□□□□□ -0.17
RFFL-209ENST00000581265 GIGYF2Q6Y7W6 1299 aaKnown RBP13.96□□□□□ -0.17
RFFL-209ENST00000581265 LRP10Q7Z4F1 713 aa13.96□□□□□ -0.17
RFFL-209ENST00000581265 ZBTB3Q9H5J0 574 aa13.96□□□□□ -0.17
RFFL-209ENST00000581265 HACL1Q9UJ83 578 aa13.96□□□□□ -0.17
RFFL-209ENST00000581265 ABCC12Q96J65 1359 aa13.96□□□□□ -0.18
RFFL-209ENST00000581265 IBTKQ9P2D0 1353 aaPredicted RBP13.96□□□□□ -0.18
RFFL-209ENST00000581265 ZNF541Q9H0D2 1346 aa13.95□□□□□ -0.18
RFFL-209ENST00000581265 ECE1P42892 770 aa13.95□□□□□ -0.18
RFFL-209ENST00000581265 PDIA6Q15084 440 aa13.95□□□□□ -0.18
RFFL-209ENST00000581265 RPGRQ92834 1020 aaKnown RBP13.95□□□□□ -0.18
RFFL-209ENST00000581265 CRAMP1Q96RY5 1269 aa13.95□□□□□ -0.18
RFFL-209ENST00000581265 TSPYL4Q9UJ04 414 aa13.95□□□□□ -0.18
RFFL-209ENST00000581265 LAMB4A4D0S4 1761 aa13.95□□□□□ -0.18
RFFL-209ENST00000581265 RIC1Q4ADV7 1423 aa13.95□□□□□ -0.18
RFFL-209ENST00000581265 SNED1Q8TER0 1413 aa13.95□□□□□ -0.18
RFFL-209ENST00000581265 NUP98P52948 1817 aa13.94□□□□□ -0.18
RFFL-209ENST00000581265 NTSR2O95665 410 aa13.94□□□□□ -0.18
RFFL-209ENST00000581265 PARP10Q53GL7 1025 aa13.94□□□□□ -0.18
RFFL-209ENST00000581265 SLC10A5Q5PT55 438 aa13.94□□□□□ -0.18
RFFL-209ENST00000581265 PNMA8AQ86V59 439 aaPredicted RBP13.94□□□□□ -0.18
RFFL-209ENST00000581265 CNTROBQ8N137 903 aa13.94□□□□□ -0.18
RFFL-209ENST00000581265 GPC2Q8N158 579 aa13.94□□□□□ -0.18
RFFL-209ENST00000581265 JDP2Q8WYK2 163 aa13.94□□□□□ -0.18
RFFL-209ENST00000581265 SCN4AP35499 1836 aa13.94□□□□□ -0.18
RFFL-209ENST00000581265 EPHX2P34913 555 aa13.93□□□□□ -0.18
RFFL-209ENST00000581265 TMPOP42166 694 aaKnown RBP13.93□□□□□ -0.18
RFFL-209ENST00000581265 MAP1SQ66K74 1059 aaPredicted RBP13.93□□□□□ -0.18
RFFL-209ENST00000581265 PPP1R42Q7Z4L9 355 aa13.93□□□□□ -0.18
RFFL-209ENST00000581265 RBM17Q96I25 401 aaKnown RBP13.93□□□□□ -0.18
RFFL-209ENST00000581265 EIF2S2P20042 333 aaKnown RBP13.92□□□□□ -0.18
RFFL-209ENST00000581265 LMOD3Q0VAK6 560 aa13.92□□□□□ -0.18
RFFL-209ENST00000581265 CAPNS2Q96L46 248 aa13.92□□□□□ -0.18
RFFL-209ENST00000581265 NLRP3Q96P20 1036 aa13.92□□□□□ -0.18
RFFL-209ENST00000581265 C3orf67Q6ZVT6 689 aa13.91□□□□□ -0.18
RFFL-209ENST00000581265 GPR101Q96P66 508 aaPredicted RBP13.91□□□□□ -0.18
RFFL-209ENST00000581265 UTP14AQ9BVJ6 771 aaKnown RBP13.91□□□□□ -0.18
RFFL-209ENST00000581265 TSKSQ9UJT2 592 aa13.91□□□□□ -0.18
RFFL-209ENST00000581265 RNF123Q5XPI4 1314 aa13.9□□□□□ -0.18
RFFL-209ENST00000581265 EIF6P56537 245 aaKnown RBP13.9□□□□□ -0.18
RFFL-209ENST00000581265 PROSER3Q2NL68 480 aa13.9□□□□□ -0.18
RFFL-209ENST00000581265 MCOLN1Q9GZU1 580 aa13.9□□□□□ -0.18
RFFL-209ENST00000581265 CHL1O00533 1208 aa13.89□□□□□ -0.19
RFFL-209ENST00000581265 PPEF1O14829 653 aaPredicted RBP13.89□□□□□ -0.19
RFFL-209ENST00000581265 ANXA1P04083 346 aa13.89□□□□□ -0.19
RFFL-209ENST00000581265 HSP90AB3PQ58FF7 597 aa13.89□□□□□ -0.19
RFFL-209ENST00000581265 COPS6Q7L5N1 327 aa13.89□□□□□ -0.19
RFFL-209ENST00000581265 LARGE2Q8N3Y3 721 aa13.89□□□□□ -0.19
RFFL-209ENST00000581265 VPS33BQ9H267 617 aa13.89□□□□□ -0.19
RFFL-209ENST00000581265 ATP6V0A2Q9Y487 856 aa13.89□□□□□ -0.19
RFFL-209ENST00000581265 TCERG1O14776 1098 aaKnown RBP13.88□□□□□ -0.19
RFFL-209ENST00000581265 BBOX1O75936 387 aa13.88□□□□□ -0.19
RFFL-209ENST00000581265 DGKZQ13574 1117 aa13.88□□□□□ -0.19
RFFL-209ENST00000581265 CYP4F22Q6NT55 531 aa13.88□□□□□ -0.19
RFFL-209ENST00000581265 NLRP10Q86W26 655 aa13.88□□□□□ -0.19
RFFL-209ENST00000581265 TMX4Q9H1E5 349 aaPredicted RBP13.88□□□□□ -0.19
RFFL-209ENST00000581265 DDX21Q9NR30 783 aaKnown RBP eCLIP13.88□□□□□ -0.19
RFFL-209ENST00000581265 GJA3Q9Y6H8 435 aa13.88□□□□□ -0.19
RFFL-209ENST00000581265 MYBBP1AQ9BQG0 1328 aaKnown RBP13.88□□□□□ -0.19
RFFL-209ENST00000581265 DDX10Q13206 875 aaKnown RBP13.87□□□□□ -0.19
RFFL-209ENST00000581265 TCIRG1Q13488 830 aa13.87□□□□□ -0.19
RFFL-209ENST00000581265 XAGE3Q8WTP9 111 aa13.87□□□□□ -0.19
RFFL-209ENST00000581265 TRIM35Q9UPQ4 493 aa13.87□□□□□ -0.19
RFFL-209ENST00000581265 COL4A5P29400 1685 aa13.87□□□□□ -0.19
RFFL-209ENST00000581265 ADAMTSL1Q8N6G6 1762 aa13.86□□□□□ -0.19
RFFL-209ENST00000581265 CA12O43570 354 aa13.86□□□□□ -0.19
RFFL-209ENST00000581265 LMOD1P29536 600 aaPredicted RBP13.86□□□□□ -0.19
RFFL-209ENST00000581265 SCNN1DP51172 638 aa13.86□□□□□ -0.19
RFFL-209ENST00000581265 AIMP1Q12904 312 aaKnown RBP13.86□□□□□ -0.19
RFFL-209ENST00000581265 NEUROD2Q15784 382 aa13.86□□□□□ -0.19
RFFL-209ENST00000581265 SLC51AQ86UW1 340 aa13.86□□□□□ -0.19
RFFL-209ENST00000581265 SP8Q8IXZ3 490 aa13.86□□□□□ -0.19
RFFL-209ENST00000581265 NIM1KQ8IY84 436 aa13.86□□□□□ -0.19
RFFL-209ENST00000581265 NECTIN2Q92692 538 aa13.86□□□□□ -0.19
RFFL-209ENST00000581265 RUNDC1Q96C34 613 aa13.86□□□□□ -0.19
RFFL-209ENST00000581265 RTFDC1Q9BY42 306 aaPredicted RBP13.86□□□□□ -0.19
RFFL-209ENST00000581265 PPIP5K2O43314 1243 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms