RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 ERBB4Q15303 1308 aa17.97■□□□□ 0.47
CCDC40-216ENST00000576241 EAPPQ56P03 285 aaPredicted RBP17.96■□□□□ 0.47
CCDC40-216ENST00000576241 BABAM1Q9NWV8 329 aa17.96■□□□□ 0.47
CCDC40-216ENST00000576241 KLRG2A4D1S0 409 aaPredicted RBP17.95■□□□□ 0.46
CCDC40-216ENST00000576241 CCDC93Q567U6 631 aa17.95■□□□□ 0.46
CCDC40-216ENST00000576241 TTLL7Q6ZT98 887 aa17.95■□□□□ 0.46
CCDC40-216ENST00000576241 ZBTB3Q9H5J0 574 aa17.95■□□□□ 0.46
CCDC40-216ENST00000576241 CLEC11AQ9Y240 323 aa17.95■□□□□ 0.46
CCDC40-216ENST00000576241 CCDC146Q8IYE0 955 aa17.94■□□□□ 0.46
CCDC40-216ENST00000576241 L3MBTL3Q96JM7 780 aaPredicted RBP17.94■□□□□ 0.46
CCDC40-216ENST00000576241 ABT1Q9ULW3 272 aaKnown RBP17.94■□□□□ 0.46
CCDC40-216ENST00000576241 EIF2S2P20042 333 aaKnown RBP17.93■□□□□ 0.46
CCDC40-216ENST00000576241 NEUROD2Q15784 382 aa17.93■□□□□ 0.46
CCDC40-216ENST00000576241 BEGAINQ9BUH8 593 aa17.93■□□□□ 0.46
CCDC40-216ENST00000576241 TSKSQ9UJT2 592 aa17.93■□□□□ 0.46
CCDC40-216ENST00000576241 SLX4Q8IY92 1834 aa17.93■□□□□ 0.46
CCDC40-216ENST00000576241 ADAMTSL1Q8N6G6 1762 aa17.92■□□□□ 0.46
CCDC40-216ENST00000576241 GPTP24298 496 aa17.92■□□□□ 0.46
CCDC40-216ENST00000576241 ALDH1B1P30837 517 aa17.92■□□□□ 0.46
CCDC40-216ENST00000576241 MAP1SQ66K74 1059 aaPredicted RBP17.92■□□□□ 0.46
CCDC40-216ENST00000576241 C7orf43Q8WVR3 580 aa17.92■□□□□ 0.46
CCDC40-216ENST00000576241 RUNDC1Q96C34 613 aa17.92■□□□□ 0.46
CCDC40-216ENST00000576241 MCOLN1Q9GZU1 580 aa17.92■□□□□ 0.46
CCDC40-216ENST00000576241 IBTKQ9P2D0 1353 aaPredicted RBP17.91■□□□□ 0.46
CCDC40-216ENST00000576241 THSD7BQ9C0I4 1608 aa17.91■□□□□ 0.46
CCDC40-216ENST00000576241 NUTM1Q86Y26 1132 aa17.91■□□□□ 0.46
CCDC40-216ENST00000576241 CNTROBQ8N137 903 aa17.91■□□□□ 0.46
CCDC40-216ENST00000576241 ARFGEF2Q9Y6D5 1785 aa17.91■□□□□ 0.46
CCDC40-216ENST00000576241 ABCC12Q96J65 1359 aa17.91■□□□□ 0.46
CCDC40-216ENST00000576241 FKBP4Q02790 459 aaKnown RBP eCLIP17.9■□□□□ 0.46
CCDC40-216ENST00000576241 GIGYF2Q6Y7W6 1299 aaKnown RBP17.9■□□□□ 0.46
CCDC40-216ENST00000576241 RTKN2Q8IZC4 609 aa17.9■□□□□ 0.46
CCDC40-216ENST00000576241 RPGRQ92834 1020 aaKnown RBP17.9■□□□□ 0.46
CCDC40-216ENST00000576241 UBN2Q6ZU65 1347 aa17.9■□□□□ 0.46
CCDC40-216ENST00000576241 GRM1Q13255 1194 aa17.89■□□□□ 0.45
CCDC40-216ENST00000576241 CRY2Q49AN0 593 aa17.89■□□□□ 0.45
CCDC40-216ENST00000576241 PARP10Q53GL7 1025 aa17.89■□□□□ 0.45
CCDC40-216ENST00000576241 SUSD4Q5VX71 490 aa17.89■□□□□ 0.45
CCDC40-216ENST00000576241 PAXIP1Q6ZW49 1069 aaPredicted RBP17.89■□□□□ 0.45
CCDC40-216ENST00000576241 PPP1R42Q7Z4L9 355 aa17.89■□□□□ 0.45
CCDC40-216ENST00000576241 CAPNS2Q96L46 248 aa17.89■□□□□ 0.45
CCDC40-216ENST00000576241 HACL1Q9UJ83 578 aa17.89■□□□□ 0.45
CCDC40-216ENST00000576241 ADAMTS8Q9UP79 889 aa17.89■□□□□ 0.45
CCDC40-216ENST00000576241 LAS1LQ9Y4W2 734 aaKnown RBP17.89■□□□□ 0.45
CCDC40-216ENST00000576241 CACNA1SQ13698 1873 aa17.88■□□□□ 0.45
CCDC40-216ENST00000576241 CASP8AP2Q9UKL3 1982 aa17.88■□□□□ 0.45
CCDC40-216ENST00000576241 EPHX2P34913 555 aa17.88■□□□□ 0.45
CCDC40-216ENST00000576241 PDIA6Q15084 440 aa17.88■□□□□ 0.45
CCDC40-216ENST00000576241 ZNF34Q8IZ26 560 aa17.88■□□□□ 0.45
CCDC40-216ENST00000576241 GPR101Q96P66 508 aaPredicted RBP17.88■□□□□ 0.45
CCDC40-216ENST00000576241 PRKRIP1Q9H875 184 aaPredicted RBP17.88■□□□□ 0.45
CCDC40-216ENST00000576241 RIC1Q4ADV7 1423 aa17.88■□□□□ 0.45
CCDC40-216ENST00000576241 CHL1O00533 1208 aa17.87■□□□□ 0.45
CCDC40-216ENST00000576241 NTSR2O95665 410 aa17.87■□□□□ 0.45
CCDC40-216ENST00000576241 CYP4F22Q6NT55 531 aa17.87■□□□□ 0.45
CCDC40-216ENST00000576241 LRP10Q7Z4F1 713 aa17.87■□□□□ 0.45
CCDC40-216ENST00000576241 NECTIN2Q92692 538 aa17.87■□□□□ 0.45
CCDC40-216ENST00000576241 ZNF277Q9NRM2 450 aaPredicted RBP17.87■□□□□ 0.45
CCDC40-216ENST00000576241 ANXA1P04083 346 aa17.86■□□□□ 0.45
CCDC40-216ENST00000576241 ECE1P42892 770 aa17.86■□□□□ 0.45
CCDC40-216ENST00000576241 PROSER3Q2NL68 480 aa17.86■□□□□ 0.45
CCDC40-216ENST00000576241 OLFM4Q6UX06 510 aa17.86■□□□□ 0.45
CCDC40-216ENST00000576241 TRIM35Q9UPQ4 493 aa17.86■□□□□ 0.45
CCDC40-216ENST00000576241 ZNF541Q9H0D2 1346 aa17.86■□□□□ 0.45
CCDC40-216ENST00000576241 LTBP1Q14766 1721 aa17.86■□□□□ 0.45
CCDC40-216ENST00000576241 NUP98P52948 1817 aa17.86■□□□□ 0.45
CCDC40-216ENST00000576241 AIMP1Q12904 312 aaKnown RBP17.85■□□□□ 0.45
CCDC40-216ENST00000576241 HSP90AB3PQ58FF7 597 aa17.85■□□□□ 0.45
CCDC40-216ENST00000576241 CC2D2BQ6DHV5 1058 aa17.85■□□□□ 0.45
CCDC40-216ENST00000576241 PNMA8AQ86V59 439 aaPredicted RBP17.85■□□□□ 0.45
CCDC40-216ENST00000576241 RBM17Q96I25 401 aaKnown RBP17.85■□□□□ 0.45
CCDC40-216ENST00000576241 UTP14AQ9BVJ6 771 aaKnown RBP17.85■□□□□ 0.45
CCDC40-216ENST00000576241 DDX21Q9NR30 783 aaKnown RBP eCLIP17.85■□□□□ 0.45
CCDC40-216ENST00000576241 HOXA10P31260 410 aaPredicted RBP17.84■□□□□ 0.45
CCDC40-216ENST00000576241 COPS6Q7L5N1 327 aa17.84■□□□□ 0.45
CCDC40-216ENST00000576241 XAGE3Q8WTP9 111 aa17.84■□□□□ 0.45
CCDC40-216ENST00000576241 RNF123Q5XPI4 1314 aa17.83■□□□□ 0.44
CCDC40-216ENST00000576241 IARSP41252 1262 aaKnown RBP17.83■□□□□ 0.44
CCDC40-216ENST00000576241 FMR1Q06787 632 aaKnown RBP eCLIP17.83■□□□□ 0.44
CCDC40-216ENST00000576241 DGKZQ13574 1117 aa17.83■□□□□ 0.44
CCDC40-216ENST00000576241 KRT24Q2M2I5 525 aa17.83■□□□□ 0.44
CCDC40-216ENST00000576241 GRIPAP1Q4V328 841 aa17.83■□□□□ 0.44
CCDC40-216ENST00000576241 SYNE4Q8N205 404 aa17.83■□□□□ 0.44
CCDC40-216ENST00000576241 NLRP3Q96P20 1036 aa17.83■□□□□ 0.44
CCDC40-216ENST00000576241 CRAMP1Q96RY5 1269 aa17.83■□□□□ 0.44
CCDC40-216ENST00000576241 PSMD1Q99460 953 aa17.83■□□□□ 0.44
CCDC40-216ENST00000576241 PPEF1O14829 653 aaPredicted RBP17.82■□□□□ 0.44
CCDC40-216ENST00000576241 AOC2O75106 756 aa17.82■□□□□ 0.44
CCDC40-216ENST00000576241 HOXB7P09629 217 aa17.82■□□□□ 0.44
CCDC40-216ENST00000576241 HDGFL1Q5TGJ6 251 aa17.82■□□□□ 0.44
CCDC40-216ENST00000576241 TMX4Q9H1E5 349 aaPredicted RBP17.82■□□□□ 0.44
CCDC40-216ENST00000576241 JDP2Q8WYK2 163 aa17.81■□□□□ 0.44
CCDC40-216ENST00000576241 CHPF2Q9P2E5 772 aa17.81■□□□□ 0.44
CCDC40-216ENST00000576241 CALD1Q05682 793 aaKnown RBP17.8■□□□□ 0.44
CCDC40-216ENST00000576241 PRPF38BQ5VTL8 546 aaKnown RBP17.8■□□□□ 0.44
CCDC40-216ENST00000576241 DBF4Q9UBU7 674 aaPredicted RBP17.8■□□□□ 0.44
CCDC40-216ENST00000576241 TCERG1O14776 1098 aaKnown RBP17.79■□□□□ 0.44
CCDC40-216ENST00000576241 MAP2K2P36507 400 aa17.79■□□□□ 0.44
CCDC40-216ENST00000576241 TCIRG1Q13488 830 aa17.79■□□□□ 0.44
CCDC40-216ENST00000576241 SLC10A5Q5PT55 438 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms