RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 PARD3Q8TEW0 1356 aa13.13□□□□□ -0.31
CIITA-208ENST00000572665 FBXO45P0C2W1 286 aa13.13□□□□□ -0.31
CIITA-208ENST00000572665 NR1H3Q13133 447 aa13.13□□□□□ -0.31
CIITA-208ENST00000572665 GPKOWQ92917 476 aaPredicted RBP eCLIP13.13□□□□□ -0.31
CIITA-208ENST00000572665 UNC93B1Q9H1C4 597 aa13.13□□□□□ -0.31
CIITA-208ENST00000572665 CABP1Q9NZU7 370 aa13.13□□□□□ -0.31
CIITA-208ENST00000572665 FCF1Q9Y324 198 aaKnown RBP13.13□□□□□ -0.31
CIITA-208ENST00000572665 TNS1Q9HBL0 1735 aaKnown RBP13.13□□□□□ -0.31
CIITA-208ENST00000572665 ZBBXA8MT70 800 aa13.12□□□□□ -0.31
CIITA-208ENST00000572665 NEUROD1Q13562 356 aa13.12□□□□□ -0.31
CIITA-208ENST00000572665 HDGFL1Q5TGJ6 251 aa13.12□□□□□ -0.31
CIITA-208ENST00000572665 CAMTA1Q9Y6Y1 1673 aa13.12□□□□□ -0.31
CIITA-208ENST00000572665 SOX11P35716 441 aa13.11□□□□□ -0.31
CIITA-208ENST00000572665 NBPF14Q5TI25 921 aa13.11□□□□□ -0.31
CIITA-208ENST00000572665 KCNH5Q8NCM2 988 aa13.11□□□□□ -0.31
CIITA-208ENST00000572665 ALG2Q9H553 416 aa13.11□□□□□ -0.31
CIITA-208ENST00000572665 FAM182BQ5T319 152 aa13.1□□□□□ -0.31
CIITA-208ENST00000572665 PDXDC2PQ6P474 469 aa13.1□□□□□ -0.31
CIITA-208ENST00000572665 LARP1Q6PKG0 1096 aaKnown RBP13.1□□□□□ -0.31
CIITA-208ENST00000572665 HOMEZQ8IX15 550 aa13.1□□□□□ -0.31
CIITA-208ENST00000572665 CRB1P82279 1406 aa13.1□□□□□ -0.31
CIITA-208ENST00000572665 PARP4Q9UKK3 1724 aaKnown RBP13.1□□□□□ -0.31
CIITA-208ENST00000572665 TTC21AQ8NDW8 1320 aa13.1□□□□□ -0.31
CIITA-208ENST00000572665 COL5A2P05997 1499 aaPredicted RBP13.1□□□□□ -0.31
CIITA-208ENST00000572665 AKAP12Q02952 1782 aa13.09□□□□□ -0.31
CIITA-208ENST00000572665 AATKQ6ZMQ8 1374 aa13.09□□□□□ -0.31
CIITA-208ENST00000572665 SLIT3O75094 1523 aa13.09□□□□□ -0.31
CIITA-208ENST00000572665 ZBTB7CA1YPR0 619 aa13.09□□□□□ -0.31
CIITA-208ENST00000572665 TRIM37O94972 964 aa13.09□□□□□ -0.31
CIITA-208ENST00000572665 APBA3O96018 575 aa13.09□□□□□ -0.31
CIITA-208ENST00000572665 SIN3AQ96ST3 1273 aa13.09□□□□□ -0.31
CIITA-208ENST00000572665 GPSM3Q9Y4H4 160 aa13.09□□□□□ -0.31
CIITA-208ENST00000572665 MMRN1Q13201 1228 aa13.08□□□□□ -0.32
CIITA-208ENST00000572665 CDCA7Q9BWT1 371 aaPredicted RBP13.08□□□□□ -0.32
CIITA-208ENST00000572665 EIF4G2P78344 907 aaKnown RBP eCLIP13.07□□□□□ -0.32
CIITA-208ENST00000572665 TOM1L2Q6ZVM7 507 aa13.07□□□□□ -0.32
CIITA-208ENST00000572665 PIK3C2AO00443 1686 aa13.07□□□□□ -0.32
CIITA-208ENST00000572665 SBNO2Q9Y2G9 1366 aa13.07□□□□□ -0.32
CIITA-208ENST00000572665 PPEF1O14829 653 aaPredicted RBP13.06□□□□□ -0.32
CIITA-208ENST00000572665 PTK2Q05397 1052 aa13.06□□□□□ -0.32
CIITA-208ENST00000572665 EZH2Q15910 746 aaKnown RBP13.06□□□□□ -0.32
CIITA-208ENST00000572665 OCSTAMPQ9BR26 566 aa13.06□□□□□ -0.32
CIITA-208ENST00000572665 OVOS2A0A0G2JMS6 1433 aa13.05□□□□□ -0.32
CIITA-208ENST00000572665 OVOS2A0A0J9YW53 1432 aa13.05□□□□□ -0.32
CIITA-208ENST00000572665 OVOS2Q6IE36 1432 aa13.05□□□□□ -0.32
CIITA-208ENST00000572665 SEMA3FQ13275 785 aa13.05□□□□□ -0.32
CIITA-208ENST00000572665 DDB1Q16531 1140 aa13.05□□□□□ -0.32
CIITA-208ENST00000572665 CAMKK2Q96RR4 588 aa13.05□□□□□ -0.32
CIITA-208ENST00000572665 TTC21BQ7Z4L5 1316 aa13.05□□□□□ -0.32
CIITA-208ENST00000572665 KTN1Q86UP2 1357 aaKnown RBP13.05□□□□□ -0.32
CIITA-208ENST00000572665 TONSLQ96HA7 1378 aa13.05□□□□□ -0.32
CIITA-208ENST00000572665 CPSF1Q10570 1443 aaKnown RBP13.05□□□□□ -0.32
CIITA-208ENST00000572665 RNF223E7ERA6 249 aa13.04□□□□□ -0.32
CIITA-208ENST00000572665 R3HDM1Q15032 1099 aaKnown RBP13.04□□□□□ -0.32
CIITA-208ENST00000572665 SH3BP5LQ7L8J4 393 aa13.04□□□□□ -0.32
CIITA-208ENST00000572665 CARD11Q9BXL7 1154 aa13.04□□□□□ -0.32
CIITA-208ENST00000572665 RREB1Q92766 1687 aa13.04□□□□□ -0.32
CIITA-208ENST00000572665 WDR17Q8IZU2 1322 aa13.04□□□□□ -0.32
CIITA-208ENST00000572665 ABCC6O95255 1503 aa13.03□□□□□ -0.32
CIITA-208ENST00000572665 MON2Q7Z3U7 1717 aa13.03□□□□□ -0.32
CIITA-208ENST00000572665 COL18A1P39060 1754 aa13.03□□□□□ -0.32
CIITA-208ENST00000572665 CSB-PGBD3P0DP91 1061 aa13.03□□□□□ -0.32
CIITA-208ENST00000572665 GGCXP38435 758 aa13.03□□□□□ -0.32
CIITA-208ENST00000572665 HDGFL2Q7Z4V5 671 aaPredicted RBP13.03□□□□□ -0.32
CIITA-208ENST00000572665 ANKLE1Q8NAG6 615 aa13.03□□□□□ -0.32
CIITA-208ENST00000572665 WNK3Q9BYP7 1800 aa13.03□□□□□ -0.32
CIITA-208ENST00000572665 RGPD3A6NKT7 1758 aaPredicted RBP13.02□□□□□ -0.32
CIITA-208ENST00000572665 RGPD4Q7Z3J3 1758 aa13.02□□□□□ -0.32
CIITA-208ENST00000572665 ARHGEF25Q86VW2 580 aa13.02□□□□□ -0.33
CIITA-208ENST00000572665 BAP1Q92560 729 aa13.02□□□□□ -0.33
CIITA-208ENST00000572665 ARHGAP9Q9BRR9 750 aa13.02□□□□□ -0.33
CIITA-208ENST00000572665 LRRC37A3O60309 1634 aa13.02□□□□□ -0.33
CIITA-208ENST00000572665 RGPD5Q99666 1765 aa13.02□□□□□ -0.33
CIITA-208ENST00000572665 LINC01559Q495D7 138 aa13.01□□□□□ -0.33
CIITA-208ENST00000572665 TERF2IPQ9NYB0 399 aa13.01□□□□□ -0.33
CIITA-208ENST00000572665 CCDC7Q96M83 1385 aa13.01□□□□□ -0.33
CIITA-208ENST00000572665 NUP188Q5SRE5 1749 aa13.01□□□□□ -0.33
CIITA-208ENST00000572665 SBF2Q86WG5 1849 aa13□□□□□ -0.33
CIITA-208ENST00000572665 ZNF511Q8NB15 262 aa13□□□□□ -0.33
CIITA-208ENST00000572665 TMC1Q8TDI8 760 aa13□□□□□ -0.33
CIITA-208ENST00000572665 PUS7Q96PZ0 661 aaKnown RBP13□□□□□ -0.33
CIITA-208ENST00000572665 UCN2Q96RP3 112 aa13□□□□□ -0.33
CIITA-208ENST00000572665 CARD10Q9BWT7 1032 aa13□□□□□ -0.33
CIITA-208ENST00000572665 USP54Q70EL1 1684 aa12.99□□□□□ -0.33
CIITA-208ENST00000572665 EXOC5O00471 708 aa12.99□□□□□ -0.33
CIITA-208ENST00000572665 PLSCR1O15162 318 aa12.99□□□□□ -0.33
CIITA-208ENST00000572665 PLA2G2CQ5R387 149 aa12.99□□□□□ -0.33
CIITA-208ENST00000572665 PPP1R18Q6NYC8 613 aa12.99□□□□□ -0.33
CIITA-208ENST00000572665 SH3RF1Q7Z6J0 888 aa12.99□□□□□ -0.33
CIITA-208ENST00000572665 ADAM32Q8TC27 787 aa12.99□□□□□ -0.33
CIITA-208ENST00000572665 PEAK1Q9H792 1746 aa12.99□□□□□ -0.33
CIITA-208ENST00000572665 USP31Q70CQ4 1352 aa12.98□□□□□ -0.33
CIITA-208ENST00000572665 NINLQ9Y2I6 1382 aa12.98□□□□□ -0.33
CIITA-208ENST00000572665 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.98□□□□□ -0.33
CIITA-208ENST00000572665 PPP1R12CQ9BZL4 782 aa12.98□□□□□ -0.33
CIITA-208ENST00000572665 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.98□□□□□ -0.33
CIITA-208ENST00000572665 NFAT5O94916 1531 aa12.98□□□□□ -0.33
CIITA-208ENST00000572665 BCL9O00512 1426 aa12.97□□□□□ -0.33
CIITA-208ENST00000572665 EDC4Q6P2E9 1401 aaKnown RBP12.97□□□□□ -0.33
CIITA-208ENST00000572665 LTN1O94822 1766 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms