RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 PXYLP1Q8TE99 480 aa8.24□□□□□ -1.09
VPS53-208ENST00000570650 PUS7Q96PZ0 661 aaKnown RBP8.24□□□□□ -1.09
VPS53-208ENST00000570650 CCDC87Q9NVE4 849 aa8.24□□□□□ -1.09
VPS53-208ENST00000570650 KCPQ6ZWJ8 1503 aa8.24□□□□□ -1.09
VPS53-208ENST00000570650 RCCD1A6NED2 376 aa8.23□□□□□ -1.09
VPS53-208ENST00000570650 RRS1Q15050 365 aaKnown RBP8.23□□□□□ -1.09
VPS53-208ENST00000570650 METTL3Q86U44 580 aaKnown RBP8.23□□□□□ -1.09
VPS53-208ENST00000570650 NLGN1Q8N2Q7 840 aa8.23□□□□□ -1.09
VPS53-208ENST00000570650 PIGBQ92521 554 aa8.23□□□□□ -1.09
VPS53-208ENST00000570650 RRAGCQ9HB90 399 aa8.23□□□□□ -1.09
VPS53-208ENST00000570650 WBP1LQ9NX94 342 aa8.23□□□□□ -1.09
VPS53-208ENST00000570650 HPS5Q9UPZ3 1129 aa8.23□□□□□ -1.09
VPS53-208ENST00000570650 MAP2P11137 1827 aaKnown RBP8.23□□□□□ -1.09
VPS53-208ENST00000570650 ITGB4P16144 1822 aa8.23□□□□□ -1.09
VPS53-208ENST00000570650 OATP04181 439 aa8.22□□□□□ -1.09
VPS53-208ENST00000570650 DNAJB2P25686 324 aa8.22□□□□□ -1.09
VPS53-208ENST00000570650 ATP6V1AP38606 617 aa8.22□□□□□ -1.09
VPS53-208ENST00000570650 TMF1P82094 1093 aa8.22□□□□□ -1.09
VPS53-208ENST00000570650 ITPK1Q13572 414 aa8.22□□□□□ -1.09
VPS53-208ENST00000570650 ZC3H15Q8WU90 426 aaKnown RBP8.22□□□□□ -1.09
VPS53-208ENST00000570650 DCAF5Q96JK2 942 aa8.22□□□□□ -1.09
VPS53-208ENST00000570650 PHOX2BQ99453 314 aa8.22□□□□□ -1.09
VPS53-208ENST00000570650 RNF181Q9P0P0 153 aa8.22□□□□□ -1.09
VPS53-208ENST00000570650 PKD1L3Q7Z443 1732 aa8.22□□□□□ -1.09
VPS53-208ENST00000570650 BRCA1P38398 1863 aaKnown RBP8.21□□□□□ -1.09
VPS53-208ENST00000570650 TNRC6CQ9HCJ0 1690 aaKnown RBP8.21□□□□□ -1.09
VPS53-208ENST00000570650 KCNA3P22001 575 aa8.21□□□□□ -1.1
VPS53-208ENST00000570650 MAP2K5Q13163 448 aa8.21□□□□□ -1.1
VPS53-208ENST00000570650 TRAPPC3LQ5T215 181 aa8.21□□□□□ -1.1
VPS53-208ENST00000570650 NLRP7Q8WX94 980 aa8.21□□□□□ -1.1
VPS53-208ENST00000570650 CARD11Q9BXL7 1154 aa8.21□□□□□ -1.1
VPS53-208ENST00000570650 TMEM134Q9H6X4 195 aa8.21□□□□□ -1.1
VPS53-208ENST00000570650 TMOD3Q9NYL9 352 aa8.21□□□□□ -1.1
VPS53-208ENST00000570650 PIM2Q9P1W9 311 aa8.21□□□□□ -1.1
VPS53-208ENST00000570650 TSR3Q9UJK0 312 aaKnown RBP8.21□□□□□ -1.1
VPS53-208ENST00000570650 RTCBQ9Y3I0 505 aaKnown RBP8.21□□□□□ -1.1
VPS53-208ENST00000570650 PARP3Q9Y6F1 533 aa8.21□□□□□ -1.1
VPS53-208ENST00000570650 ARFGEF1Q9Y6D6 1849 aa8.21□□□□□ -1.1
VPS53-208ENST00000570650 INSRP06213 1382 aa8.21□□□□□ -1.1
VPS53-208ENST00000570650 RNF40O75150 1001 aa8.2□□□□□ -1.1
VPS53-208ENST00000570650 HSP90AB2PQ58FF8 381 aa8.2□□□□□ -1.1
VPS53-208ENST00000570650 DALRD3Q5D0E6 543 aaKnown RBP8.2□□□□□ -1.1
VPS53-208ENST00000570650 ASAP1Q9ULH1 1129 aa8.2□□□□□ -1.1
VPS53-208ENST00000570650 SPG7Q9UQ90 795 aa8.2□□□□□ -1.1
VPS53-208ENST00000570650 KIF24Q5T7B8 1368 aa8.2□□□□□ -1.1
VPS53-208ENST00000570650 C4AP0C0L4 1744 aa8.2□□□□□ -1.1
VPS53-208ENST00000570650 IRF6O14896 467 aa8.19□□□□□ -1.1
VPS53-208ENST00000570650 ZMYND10O75800 440 aa8.19□□□□□ -1.1
VPS53-208ENST00000570650 GYS1P13807 737 aa8.19□□□□□ -1.1
VPS53-208ENST00000570650 RFC4P35249 363 aa8.19□□□□□ -1.1
VPS53-208ENST00000570650 SIN3AQ96ST3 1273 aa8.19□□□□□ -1.1
VPS53-208ENST00000570650 ZC3H4Q9UPT8 1303 aaKnown RBP8.19□□□□□ -1.1
VPS53-208ENST00000570650 FLT4P35916 1363 aa8.19□□□□□ -1.1
VPS53-208ENST00000570650 VEGFAP15692 232 aaPredicted RBP8.18□□□□□ -1.1
VPS53-208ENST00000570650 RC3H1Q5TC82 1133 aaKnown RBP8.18□□□□□ -1.1
VPS53-208ENST00000570650 CCDC102AQ96A19 550 aa8.18□□□□□ -1.1
VPS53-208ENST00000570650 GGNBP2Q9H3C7 697 aa8.18□□□□□ -1.1
VPS53-208ENST00000570650 ATG3Q9NT62 314 aa8.18□□□□□ -1.1
VPS53-208ENST00000570650 KDRP35968 1356 aa8.18□□□□□ -1.1
VPS53-208ENST00000570650 FYB1O15117 783 aa8.17□□□□□ -1.1
VPS53-208ENST00000570650 RPS6KA4O75676 772 aa8.17□□□□□ -1.1
VPS53-208ENST00000570650 PPP4CP60510 307 aa8.17□□□□□ -1.1
VPS53-208ENST00000570650 NEUROD1Q13562 356 aa8.17□□□□□ -1.1
VPS53-208ENST00000570650 SLF2Q8IX21 1173 aa8.17□□□□□ -1.1
VPS53-208ENST00000570650 CNTNAP4Q9C0A0 1308 aa8.17□□□□□ -1.1
VPS53-208ENST00000570650 NCAPD2Q15021 1401 aa8.17□□□□□ -1.1
VPS53-208ENST00000570650 SBF1O95248 1867 aa8.17□□□□□ -1.1
VPS53-208ENST00000570650 GLTPD2A6NH11 291 aa8.16□□□□□ -1.1
VPS53-208ENST00000570650 PHKG2P15735 406 aa8.16□□□□□ -1.1
VPS53-208ENST00000570650 RASSF7Q02833 373 aa8.16□□□□□ -1.1
VPS53-208ENST00000570650 IFNL2Q8IZJ0 200 aa8.16□□□□□ -1.1
VPS53-208ENST00000570650 PCNTO95613 3336 aa8.16□□□□□ -1.1
VPS53-208ENST00000570650 KDM6AO15550 1401 aaPredicted RBP8.15□□□□□ -1.1
VPS53-208ENST00000570650 TONSLQ96HA7 1378 aa8.15□□□□□ -1.1
VPS53-208ENST00000570650 LMNB1P20700 586 aa8.15□□□□□ -1.1
VPS53-208ENST00000570650 CHRNA5P30532 468 aa8.15□□□□□ -1.1
VPS53-208ENST00000570650 SLC4A9Q96Q91 983 aa8.15□□□□□ -1.1
VPS53-208ENST00000570650 TESK2Q96S53 571 aa8.15□□□□□ -1.1
VPS53-208ENST00000570650 PRDM10Q9NQV6 1147 aa8.15□□□□□ -1.1
VPS53-208ENST00000570650 ZNF831Q5JPB2 1677 aa8.14□□□□□ -1.11
VPS53-208ENST00000570650 FOXN1O15353 648 aa8.14□□□□□ -1.11
VPS53-208ENST00000570650 SLC10A3P09131 477 aa8.14□□□□□ -1.11
VPS53-208ENST00000570650 DDR1Q08345 913 aa8.14□□□□□ -1.11
VPS53-208ENST00000570650 NYAP1Q6ZVC0 841 aa8.14□□□□□ -1.11
VPS53-208ENST00000570650 MKRN1Q9UHC7 482 aaKnown RBP8.14□□□□□ -1.11
VPS53-208ENST00000570650 COL5A3P25940 1745 aaPredicted RBP8.14□□□□□ -1.11
VPS53-208ENST00000570650 USP42Q9H9J4 1324 aaKnown RBP8.13□□□□□ -1.11
VPS53-208ENST00000570650 ERVV-2B6SEH9 535 aa8.13□□□□□ -1.11
VPS53-208ENST00000570650 KRI1Q8N9T8 703 aaKnown RBP8.13□□□□□ -1.11
VPS53-208ENST00000570650 PLA2G2EQ9NZK7 142 aa8.13□□□□□ -1.11
VPS53-208ENST00000570650 SRP68Q9UHB9 627 aaKnown RBP8.13□□□□□ -1.11
VPS53-208ENST00000570650 EMILIN1Q9Y6C2 1016 aa8.13□□□□□ -1.11
VPS53-208ENST00000570650 MYH14Q7Z406 1995 aaKnown RBP8.12□□□□□ -1.11
VPS53-208ENST00000570650 ST20-MTHFSA0A0A6YYL1 179 aa8.12□□□□□ -1.11
VPS53-208ENST00000570650 POLRMTO00411 1230 aaKnown RBP8.12□□□□□ -1.11
VPS53-208ENST00000570650 PPM1GO15355 546 aaPredicted RBP8.12□□□□□ -1.11
VPS53-208ENST00000570650 CTCFP49711 727 aaPredicted RBP8.12□□□□□ -1.11
VPS53-208ENST00000570650 AIDAQ96BJ3 306 aa8.12□□□□□ -1.11
VPS53-208ENST00000570650 CNTNAP1P78357 1384 aa8.11□□□□□ -1.11
VPS53-208ENST00000570650 WASHC2AQ641Q2 1341 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms