RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 SLC39A13Q96H72 371 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 ESF1Q9H501 851 aaKnown RBP4.19□□□□□ -1.74
VPS35-209ENST00000568642 QTRT2Q9H974 415 aaKnown RBP4.19□□□□□ -1.74
VPS35-209ENST00000568642 FAN1Q9Y2M0 1017 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 HECW1Q76N89 1606 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 RTEL1-TNFRSF6BF6WH68 1400 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 NPATQ14207 1427 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 IQGAP1P46940 1657 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 CFAP74Q9C0B2 1584 aa4.19□□□□□ -1.74
VPS35-209ENST00000568642 CCDC88BA6NC98 1476 aa4.18□□□□□ -1.74
VPS35-209ENST00000568642 AATKQ6ZMQ8 1374 aa4.18□□□□□ -1.74
VPS35-209ENST00000568642 CUL9Q8IWT3 2517 aa4.18□□□□□ -1.74
VPS35-209ENST00000568642 PIK3CDO00329 1044 aa4.18□□□□□ -1.74
VPS35-209ENST00000568642 ATP9BO43861 1147 aa4.18□□□□□ -1.74
VPS35-209ENST00000568642 PPFIA4O75335 1185 aa4.18□□□□□ -1.74
VPS35-209ENST00000568642 NDUFV2P19404 249 aa4.18□□□□□ -1.74
VPS35-209ENST00000568642 ITGB7P26010 798 aa4.18□□□□□ -1.74
VPS35-209ENST00000568642 PTPROQ16827 1216 aa4.18□□□□□ -1.74
VPS35-209ENST00000568642 B4GALNT3Q6L9W6 998 aa4.18□□□□□ -1.74
VPS35-209ENST00000568642 ZNF746Q6NUN9 644 aaPredicted RBP4.18□□□□□ -1.74
VPS35-209ENST00000568642 USB1Q9BQ65 265 aaKnown RBP4.18□□□□□ -1.74
VPS35-209ENST00000568642 BRINP2Q9C0B6 783 aa4.18□□□□□ -1.74
VPS35-209ENST00000568642 ZFAND3Q9H8U3 227 aa4.18□□□□□ -1.74
VPS35-209ENST00000568642 RNF19AQ9NV58 838 aa4.18□□□□□ -1.74
VPS35-209ENST00000568642 SCAF11Q99590 1463 aaKnown RBP4.18□□□□□ -1.74
VPS35-209ENST00000568642 BRWD3Q6RI45 1802 aa4.17□□□□□ -1.74
VPS35-209ENST00000568642 MAFGO15525 162 aa4.17□□□□□ -1.74
VPS35-209ENST00000568642 DKK1O94907 266 aa4.17□□□□□ -1.74
VPS35-209ENST00000568642 ADAMTS2O95450 1211 aa4.17□□□□□ -1.74
VPS35-209ENST00000568642 GJA5P36382 358 aa4.17□□□□□ -1.74
VPS35-209ENST00000568642 R3HDM1Q15032 1099 aaKnown RBP4.17□□□□□ -1.74
VPS35-209ENST00000568642 TSNAXIP1Q2TAA8 658 aa4.17□□□□□ -1.74
VPS35-209ENST00000568642 CRTC2Q53ET0 693 aaPredicted RBP4.17□□□□□ -1.74
VPS35-209ENST00000568642 ZNF326Q5BKZ1 582 aaKnown RBP4.17□□□□□ -1.74
VPS35-209ENST00000568642 PMM1Q92871 262 aa4.17□□□□□ -1.74
VPS35-209ENST00000568642 MYH16Q9H6N6 1097 aa4.17□□□□□ -1.74
VPS35-209ENST00000568642 NOVA2Q9UNW9 492 aaKnown RBP4.17□□□□□ -1.74
VPS35-209ENST00000568642 FGD6Q6ZV73 1430 aa4.17□□□□□ -1.74
VPS35-209ENST00000568642 SHANK3Q9BYB0 1731 aa4.17□□□□□ -1.74
VPS35-209ENST00000568642 PCNTO95613 3336 aa4.17□□□□□ -1.74
VPS35-209ENST00000568642 SOS2Q07890 1332 aaPredicted RBP4.17□□□□□ -1.74
VPS35-209ENST00000568642 ATP10AO60312 1499 aa4.17□□□□□ -1.74
VPS35-209ENST00000568642 DNMT1P26358 1616 aaKnown RBP4.17□□□□□ -1.74
VPS35-209ENST00000568642 CACNA1AO00555 2505 aa4.17□□□□□ -1.74
VPS35-209ENST00000568642 CCDC194A0A1B0GVG4 234 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 OATP04181 439 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 CELA2BP08218 269 aaPredicted RBP4.16□□□□□ -1.74
VPS35-209ENST00000568642 BMP2P12643 396 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 CD46P15529 392 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 ARHGAP4P98171 946 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 PTSQ03393 145 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 CTDSPL2Q05D32 466 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 PTK7Q13308 1070 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 COL19A1Q14993 1142 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 LCE1DQ5T752 114 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 TAS1R3Q7RTX0 852 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 SMC5Q8IY18 1101 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 C1orf216Q8TAB5 229 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 ITPKCQ96DU7 683 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 ASB16Q96NS5 453 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 METTL14Q9HCE5 456 aaKnown RBP4.16□□□□□ -1.74
VPS35-209ENST00000568642 CHPF2Q9P2E5 772 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 PRKAG2Q9UGJ0 569 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 LRRC9Q6ZRR7 1453 aa4.16□□□□□ -1.74
VPS35-209ENST00000568642 UNC13BO14795 1591 aa4.15□□□□□ -1.74
VPS35-209ENST00000568642 KIF14Q15058 1648 aa4.15□□□□□ -1.74
VPS35-209ENST00000568642 PHF20L1A8MW92 1017 aa4.15□□□□□ -1.75
VPS35-209ENST00000568642 SCAMP3O14828 347 aaKnown RBP4.15□□□□□ -1.75
VPS35-209ENST00000568642 PEX14O75381 377 aa4.15□□□□□ -1.75
VPS35-209ENST00000568642 ZIC2O95409 532 aaPredicted RBP4.15□□□□□ -1.75
VPS35-209ENST00000568642 FGD1P98174 961 aa4.15□□□□□ -1.75
VPS35-209ENST00000568642 FANCCQ00597 558 aa4.15□□□□□ -1.75
VPS35-209ENST00000568642 Q3C1V9 767 aa4.15□□□□□ -1.75
VPS35-209ENST00000568642 PLEKHG6Q3KR16 790 aa4.15□□□□□ -1.75
VPS35-209ENST00000568642 CCDC181Q5TID7 509 aa4.15□□□□□ -1.75
VPS35-209ENST00000568642 VWA5B2Q8N398 1253 aa4.15□□□□□ -1.75
VPS35-209ENST00000568642 LRRN4Q8WUT4 740 aa4.15□□□□□ -1.75
VPS35-209ENST00000568642 ARMC5Q96C12 935 aa4.15□□□□□ -1.75
VPS35-209ENST00000568642 CCDC136Q96JN2 1154 aa4.15□□□□□ -1.75
VPS35-209ENST00000568642 TANGO6Q9C0B7 1094 aa4.15□□□□□ -1.75
VPS35-209ENST00000568642 MKRN1Q9UHC7 482 aaKnown RBP4.15□□□□□ -1.75
VPS35-209ENST00000568642 DMGDHQ9UI17 866 aaKnown RBP4.15□□□□□ -1.75
VPS35-209ENST00000568642 TMA7Q9Y2S6 64 aaKnown RBP4.15□□□□□ -1.75
VPS35-209ENST00000568642 RPS6KL1Q9Y6S9 549 aa4.15□□□□□ -1.75
VPS35-209ENST00000568642 WDR90Q96KV7 1748 aa4.15□□□□□ -1.75
VPS35-209ENST00000568642 IGHA2P01877 340 aa4.14□□□□□ -1.75
VPS35-209ENST00000568642 SOX11P35716 441 aa4.14□□□□□ -1.75
VPS35-209ENST00000568642 TNNI2P48788 182 aa4.14□□□□□ -1.75
VPS35-209ENST00000568642 MAP3K10Q02779 954 aa4.14□□□□□ -1.75
VPS35-209ENST00000568642 MLLT1Q03111 559 aaPredicted RBP4.14□□□□□ -1.75
VPS35-209ENST00000568642 DIXDC1Q155Q3 683 aa4.14□□□□□ -1.75
VPS35-209ENST00000568642 OCLNQ16625 522 aa4.14□□□□□ -1.75
VPS35-209ENST00000568642 APBB1IPQ7Z5R6 666 aaPredicted RBP4.14□□□□□ -1.75
VPS35-209ENST00000568642 NT5DC4Q86YG4 428 aa4.14□□□□□ -1.75
VPS35-209ENST00000568642 LINC00528Q8N1L1 170 aa4.14□□□□□ -1.75
VPS35-209ENST00000568642 CCDC155Q8N6L0 562 aa4.14□□□□□ -1.75
VPS35-209ENST00000568642 FAM174AQ8TBP5 190 aa4.14□□□□□ -1.75
VPS35-209ENST00000568642 MAF1Q9H063 256 aa4.14□□□□□ -1.75
VPS35-209ENST00000568642 PRDM10Q9NQV6 1147 aa4.14□□□□□ -1.75
VPS35-209ENST00000568642 PCDHGC3Q9UN70 934 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms