RNA–Protein interactions for RNA: ENST00000563410.1

CHD9-208, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 488 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-208ENST00000563410 CCDC146Q8IYE0 955 aa27.52■■■□□ 2
CHD9-208ENST00000563410 SYNE4Q8N205 404 aa27.52■■■□□ 2
CHD9-208ENST00000563410 IARSP41252 1262 aaKnown RBP27.51■■□□□ 1.99
CHD9-208ENST00000563410 PSMD1Q99460 953 aa27.51■■□□□ 1.99
CHD9-208ENST00000563410 C3orf67Q6ZVT6 689 aa27.5■■□□□ 1.99
CHD9-208ENST00000563410 RPGRQ92834 1020 aaKnown RBP27.5■■□□□ 1.99
CHD9-208ENST00000563410 LAMB2P55268 1798 aa27.5■■□□□ 1.99
CHD9-208ENST00000563410 IQCA1LA6NCM1 817 aa27.49■■□□□ 1.99
CHD9-208ENST00000563410 FZD9O00144 591 aa27.49■■□□□ 1.99
CHD9-208ENST00000563410 PARP10Q53GL7 1025 aa27.49■■□□□ 1.99
CHD9-208ENST00000563410 PPP1R42Q7Z4L9 355 aa27.49■■□□□ 1.99
CHD9-208ENST00000563410 TAF1DQ9H5J8 278 aaPredicted RBP27.49■■□□□ 1.99
CHD9-208ENST00000563410 COL4A5P29400 1685 aa27.49■■□□□ 1.99
CHD9-208ENST00000563410 NEUROD2Q15784 382 aa27.48■■□□□ 1.99
CHD9-208ENST00000563410 SLC51AQ86UW1 340 aa27.48■■□□□ 1.99
CHD9-208ENST00000563410 TRIM35Q9UPQ4 493 aa27.48■■□□□ 1.99
CHD9-208ENST00000563410 ADAMTSL1Q8N6G6 1762 aa27.48■■□□□ 1.99
CHD9-208ENST00000563410 CHL1O00533 1208 aa27.47■■□□□ 1.99
CHD9-208ENST00000563410 CC2D2BQ6DHV5 1058 aa27.47■■□□□ 1.99
CHD9-208ENST00000563410 CRAMP1Q96RY5 1269 aa27.47■■□□□ 1.99
CHD9-208ENST00000563410 KRT24Q2M2I5 525 aa27.46■■□□□ 1.99
CHD9-208ENST00000563410 NECTIN2Q92692 538 aa27.46■■□□□ 1.99
CHD9-208ENST00000563410 RUNDC1Q96C34 613 aa27.46■■□□□ 1.99
CHD9-208ENST00000563410 RBM17Q96I25 401 aaKnown RBP27.46■■□□□ 1.99
CHD9-208ENST00000563410 SLC10A5Q5PT55 438 aa27.44■■□□□ 1.98
CHD9-208ENST00000563410 COPS6Q7L5N1 327 aa27.44■■□□□ 1.98
CHD9-208ENST00000563410 LDHDQ86WU2 507 aa27.44■■□□□ 1.98
CHD9-208ENST00000563410 UTP14AQ9BVJ6 771 aaKnown RBP27.44■■□□□ 1.98
CHD9-208ENST00000563410 XAGE3Q8WTP9 111 aa27.43■■□□□ 1.98
CHD9-208ENST00000563410 NLRP3Q96P20 1036 aa27.43■■□□□ 1.98
CHD9-208ENST00000563410 HACL1Q9UJ83 578 aa27.43■■□□□ 1.98
CHD9-208ENST00000563410 ADAMTS8Q9UP79 889 aa27.43■■□□□ 1.98
CHD9-208ENST00000563410 PASKQ96RG2 1323 aa27.42■■□□□ 1.98
CHD9-208ENST00000563410 PPEF1O14829 653 aaPredicted RBP27.42■■□□□ 1.98
CHD9-208ENST00000563410 AIMP1Q12904 312 aaKnown RBP27.42■■□□□ 1.98
CHD9-208ENST00000563410 WDR43Q15061 677 aaKnown RBP eCLIP27.42■■□□□ 1.98
CHD9-208ENST00000563410 DDX21Q9NR30 783 aaKnown RBP eCLIP27.42■■□□□ 1.98
CHD9-208ENST00000563410 CREBZFQ9NS37 354 aa27.42■■□□□ 1.98
CHD9-208ENST00000563410 RNF123Q5XPI4 1314 aa27.41■■□□□ 1.98
CHD9-208ENST00000563410 GRIPAP1Q4V328 841 aa27.41■■□□□ 1.98
CHD9-208ENST00000563410 GPC2Q8N158 579 aa27.41■■□□□ 1.98
CHD9-208ENST00000563410 JDP2Q8WYK2 163 aa27.41■■□□□ 1.98
CHD9-208ENST00000563410 TAF1P21675 1872 aa27.4■■□□□ 1.98
CHD9-208ENST00000563410 TCERG1O14776 1098 aaKnown RBP27.4■■□□□ 1.98
CHD9-208ENST00000563410 EPHX2P34913 555 aa27.4■■□□□ 1.98
CHD9-208ENST00000563410 EAPPQ56P03 285 aaPredicted RBP27.4■■□□□ 1.98
CHD9-208ENST00000563410 NLRP10Q86W26 655 aa27.4■■□□□ 1.98
CHD9-208ENST00000563410 LAS1LQ9Y4W2 734 aaKnown RBP27.4■■□□□ 1.98
CHD9-208ENST00000563410 LTBP1Q14766 1721 aa27.4■■□□□ 1.98
CHD9-208ENST00000563410 HSP90AB3PQ58FF7 597 aa27.39■■□□□ 1.98
CHD9-208ENST00000563410 COL13A1Q5TAT6 717 aaPredicted RBP27.39■■□□□ 1.98
CHD9-208ENST00000563410 ITGBL1O95965 494 aaPredicted RBP27.38■■□□□ 1.97
CHD9-208ENST00000563410 TCIRG1Q13488 830 aa27.38■■□□□ 1.97
CHD9-208ENST00000563410 CHPF2Q9P2E5 772 aa27.38■■□□□ 1.97
CHD9-208ENST00000563410 ABCC4O15439 1325 aa27.38■■□□□ 1.97
CHD9-208ENST00000563410 PRKRIP1Q9H875 184 aaPredicted RBP27.37■■□□□ 1.97
CHD9-208ENST00000563410 DDX60Q8IY21 1712 aaKnown RBP27.36■■□□□ 1.97
CHD9-208ENST00000563410 LARGE2Q8N3Y3 721 aa27.36■■□□□ 1.97
CHD9-208ENST00000563410 ATP6V0A2Q9Y487 856 aa27.36■■□□□ 1.97
CHD9-208ENST00000563410 HOXB7P09629 217 aa27.35■■□□□ 1.97
CHD9-208ENST00000563410 HSPA1AP0DMV8 641 aaKnown RBP27.35■■□□□ 1.97
CHD9-208ENST00000563410 HSPA1BP0DMV9 641 aaKnown RBP27.35■■□□□ 1.97
CHD9-208ENST00000563410 HCLS1P14317 486 aaPredicted RBP27.35■■□□□ 1.97
CHD9-208ENST00000563410 EIF6P56537 245 aaKnown RBP27.35■■□□□ 1.97
CHD9-208ENST00000563410 PNMA8AQ86V59 439 aaPredicted RBP27.35■■□□□ 1.97
CHD9-208ENST00000563410 MKRN1Q9UHC7 482 aaKnown RBP27.35■■□□□ 1.97
CHD9-208ENST00000563410 HDGFL1Q5TGJ6 251 aa27.34■■□□□ 1.97
CHD9-208ENST00000563410 TRMT112Q9UI30 125 aaKnown RBP27.34■■□□□ 1.97
CHD9-208ENST00000563410 CLEC11AQ9Y240 323 aa27.34■■□□□ 1.97
CHD9-208ENST00000563410 GJA3Q9Y6H8 435 aa27.34■■□□□ 1.97
CHD9-208ENST00000563410 CFAP44Q96MT7 982 aa27.33■■□□□ 1.97
CHD9-208ENST00000563410 SH3TC1Q8TE82 1336 aa27.32■■□□□ 1.96
CHD9-208ENST00000563410 CNTNAP1P78357 1384 aa27.32■■□□□ 1.96
CHD9-208ENST00000563410 SCNN1DP51172 638 aa27.31■■□□□ 1.96
CHD9-208ENST00000563410 AOC3Q16853 763 aa27.31■■□□□ 1.96
CHD9-208ENST00000563410 PLBD2Q8NHP8 589 aa27.31■■□□□ 1.96
CHD9-208ENST00000563410 PPIP5K2O43314 1243 aa27.3■■□□□ 1.96
CHD9-208ENST00000563410 BBOX1O75936 387 aa27.3■■□□□ 1.96
CHD9-208ENST00000563410 MAP1SQ66K74 1059 aaPredicted RBP27.3■■□□□ 1.96
CHD9-208ENST00000563410 NIM1KQ8IY84 436 aa27.3■■□□□ 1.96
CHD9-208ENST00000563410 ZNF428Q96B54 188 aa27.3■■□□□ 1.96
CHD9-208ENST00000563410 RTFDC1Q9BY42 306 aaPredicted RBP27.3■■□□□ 1.96
CHD9-208ENST00000563410 VPS33BQ9H267 617 aa27.3■■□□□ 1.96
CHD9-208ENST00000563410 MBIPQ9NS73 344 aa27.3■■□□□ 1.96
CHD9-208ENST00000563410 DBF4Q9UBU7 674 aaPredicted RBP27.3■■□□□ 1.96
CHD9-208ENST00000563410 TMEM88BA6NKF7 163 aa27.29■■□□□ 1.96
CHD9-208ENST00000563410 ZNF853P0CG23 659 aa27.29■■□□□ 1.96
CHD9-208ENST00000563410 EPS15P42566 896 aa27.29■■□□□ 1.96
CHD9-208ENST00000563410 DUSP27Q5VZP5 1158 aa27.29■■□□□ 1.96
CHD9-208ENST00000563410 ANKRD13DQ6ZTN6 518 aa27.29■■□□□ 1.96
CHD9-208ENST00000563410 SP8Q8IXZ3 490 aa27.29■■□□□ 1.96
CHD9-208ENST00000563410 CNTROBQ8N137 903 aa27.29■■□□□ 1.96
CHD9-208ENST00000563410 TMX4Q9H1E5 349 aaPredicted RBP27.29■■□□□ 1.96
CHD9-208ENST00000563410 LRRC37AA6NMS7 1700 aa27.29■■□□□ 1.96
CHD9-208ENST00000563410 ISCA1Q9BUE6 129 aa27.28■■□□□ 1.96
CHD9-208ENST00000563410 LMOD1P29536 600 aaPredicted RBP27.27■■□□□ 1.96
CHD9-208ENST00000563410 GRAPQ13588 217 aa27.27■■□□□ 1.96
CHD9-208ENST00000563410 DDX46Q7L014 1031 aaKnown RBP27.27■■□□□ 1.96
CHD9-208ENST00000563410 GRAPLQ8TC17 118 aaPredicted RBP27.27■■□□□ 1.96
CHD9-208ENST00000563410 APAF1O14727 1248 aa27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms