RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 NBPF7P0C2Y1 421 aaPredicted RBP9.82□□□□□ -0.84
USP3-211ENST00000559257 RHBDL3P58872 404 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 DEUP1Q05D60 604 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 DBN1Q16643 649 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 PUS10Q3MIT2 529 aaKnown RBP9.82□□□□□ -0.84
USP3-211ENST00000559257 ZKSCAN2Q63HK3 967 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 IQCA1Q86XH1 822 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 ZKSCAN4Q969J2 545 aaPredicted RBP9.82□□□□□ -0.84
USP3-211ENST00000559257 MRFAP1L1Q96HT8 127 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 RMDN2Q96LZ7 410 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 KIF9Q9HAQ2 790 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 PBRM1Q86U86 1689 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 BCORL1Q5H9F3 1711 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 TBC1D8O95759 1140 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 IFT88Q13099 833 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 CCDC181Q5TID7 509 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 MAB21L3Q8N8X9 362 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 SMCR8Q8TEV9 937 aaPredicted RBP9.82□□□□□ -0.84
USP3-211ENST00000559257 YIPF2Q9BWQ6 316 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 MYO6Q9UM54 1294 aa9.82□□□□□ -0.84
USP3-211ENST00000559257 FCHSD2O94868 740 aa9.81□□□□□ -0.84
USP3-211ENST00000559257 MYL1P05976 194 aa9.81□□□□□ -0.84
USP3-211ENST00000559257 CASTP20810 708 aaKnown RBP9.81□□□□□ -0.84
USP3-211ENST00000559257 PTPN14Q15678 1187 aa9.81□□□□□ -0.84
USP3-211ENST00000559257 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.81□□□□□ -0.84
USP3-211ENST00000559257 TAX1BP1Q86VP1 789 aa9.81□□□□□ -0.84
USP3-211ENST00000559257 MFN1Q8IWA4 741 aa9.81□□□□□ -0.84
USP3-211ENST00000559257 MIPOL1Q8TD10 442 aa9.81□□□□□ -0.84
USP3-211ENST00000559257 RWDD1Q9H446 243 aaPredicted RBP9.81□□□□□ -0.84
USP3-211ENST00000559257 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.81□□□□□ -0.84
USP3-211ENST00000559257 NSFL1CQ9UNZ2 370 aaKnown RBP9.81□□□□□ -0.84
USP3-211ENST00000559257 ZNF521Q96K83 1311 aa9.81□□□□□ -0.84
USP3-211ENST00000559257 PLXNC1O60486 1568 aa9.81□□□□□ -0.84
USP3-211ENST00000559257 NEMFO60524 1076 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 CLNS1AP54105 237 aaKnown RBP9.8□□□□□ -0.84
USP3-211ENST00000559257 KLHL10Q6JEL2 608 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 TRMT2AQ8IZ69 625 aaKnown RBP9.8□□□□□ -0.84
USP3-211ENST00000559257 SAMD3Q8N6K7 520 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 TEKT1Q969V4 418 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 RBM17Q96I25 401 aaKnown RBP9.8□□□□□ -0.84
USP3-211ENST00000559257 TMX3Q96JJ7 454 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 POLR3CQ9BUI4 534 aaPredicted RBP9.8□□□□□ -0.84
USP3-211ENST00000559257 STK31Q9BXU1 1019 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 ZCCHC17Q9NP64 241 aaKnown RBP9.8□□□□□ -0.84
USP3-211ENST00000559257 RGL1Q9NZL6 768 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 ATXN2Q99700 1313 aaKnown RBP9.8□□□□□ -0.84
USP3-211ENST00000559257 ATP10AO60312 1499 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 AK9Q5TCS8 1911 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 PDLIM1O00151 329 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 AHCYL1O43865 530 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 SNX1Q13596 522 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 LAMB3Q13751 1172 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 ERCC6LQ2NKX8 1250 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 ARHGAP29Q52LW3 1261 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 CCDC158Q5M9N0 1113 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 CCDC183Q5T5S1 534 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 FOXR1Q6PIV2 292 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 AMOTL1Q8IY63 956 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 FAM81AQ8TBF8 368 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 TMOD4Q9NZQ9 345 aa9.8□□□□□ -0.84
USP3-211ENST00000559257 ORC3Q9UBD5 711 aaPredicted RBP9.8□□□□□ -0.84
USP3-211ENST00000559257 U3KPZ7 1027 aaPredicted RBP9.8□□□□□ -0.84
USP3-211ENST00000559257 NKTRP30414 1462 aaKnown RBP9.8□□□□□ -0.84
USP3-211ENST00000559257 TARBP1Q13395 1621 aaKnown RBP9.8□□□□□ -0.84
USP3-211ENST00000559257 ERC2O15083 957 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 OPA1O60313 960 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 CD2BP2O95400 341 aaKnown RBP9.79□□□□□ -0.84
USP3-211ENST00000559257 ZNF24P17028 368 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 PTGS1P23219 599 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 PSMC1P62191 440 aaKnown RBP9.79□□□□□ -0.84
USP3-211ENST00000559257 CCDC93Q567U6 631 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 OR8K1Q8NGG5 319 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 MAGEC3Q8TD91 643 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 ZBTB10Q96DT7 871 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 TRPV5Q9NQA5 729 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 FOXD4L1Q9NU39 408 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 PLB1Q6P1J6 1458 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 WDR62O43379 1518 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 FESP07332 822 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 FAM200BP0CF97 657 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 VCAM1P19320 739 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 ARMC3Q5W041 872 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 IQCF2Q8IXL9 164 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 PHC3Q8NDX5 983 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 B4GALNT2Q8NHY0 566 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 ACBD3Q9H3P7 528 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 UNC45AQ9H3U1 944 aa9.79□□□□□ -0.84
USP3-211ENST00000559257 DNMT1P26358 1616 aaKnown RBP9.78□□□□□ -0.84
USP3-211ENST00000559257 ADAMTS12P58397 1594 aa9.78□□□□□ -0.84
USP3-211ENST00000559257 GJA8P48165 433 aa9.78□□□□□ -0.84
USP3-211ENST00000559257 CACTIN-AS1Q8N1I8 211 aa9.78□□□□□ -0.84
USP3-211ENST00000559257 HDAC7Q8WUI4 952 aa9.78□□□□□ -0.84
USP3-211ENST00000559257 CFAP53Q96M91 514 aa9.78□□□□□ -0.84
USP3-211ENST00000559257 SASH3O75995 380 aa9.78□□□□□ -0.84
USP3-211ENST00000559257 BRD1O95696 1058 aa9.78□□□□□ -0.84
USP3-211ENST00000559257 TRPC1P48995 793 aa9.78□□□□□ -0.84
USP3-211ENST00000559257 CDR1P51861 262 aa9.78□□□□□ -0.84
USP3-211ENST00000559257 ZBED6P86452 979 aa9.78□□□□□ -0.84
USP3-211ENST00000559257 G3BP1Q13283 466 aaKnown RBP eCLIP9.78□□□□□ -0.84
USP3-211ENST00000559257 RBM26Q5T8P6 1007 aaKnown RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms