RNA–Protein interactions for RNA: ENST00000557262.5

TUBB3-213, Transcript of tubulin beta 3 class III, humanhuman

TSL 1 (best)

Gene TUBB3, Length 888 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBB3-213ENST00000557262 PROSER3Q2NL68 480 aa20.79■□□□□ 0.92
TUBB3-213ENST00000557262 RBM17Q96I25 401 aaKnown RBP20.79■□□□□ 0.92
TUBB3-213ENST00000557262 L3MBTL3Q96JM7 780 aaPredicted RBP20.79■□□□□ 0.92
TUBB3-213ENST00000557262 CRAMP1Q96RY5 1269 aa20.79■□□□□ 0.92
TUBB3-213ENST00000557262 ADAMTS8Q9UP79 889 aa20.79■□□□□ 0.92
TUBB3-213ENST00000557262 TRIM35Q9UPQ4 493 aa20.79■□□□□ 0.92
TUBB3-213ENST00000557262 IARSP41252 1262 aaKnown RBP20.78■□□□□ 0.92
TUBB3-213ENST00000557262 GRIPAP1Q4V328 841 aa20.78■□□□□ 0.92
TUBB3-213ENST00000557262 SLC10A5Q5PT55 438 aa20.78■□□□□ 0.92
TUBB3-213ENST00000557262 CHADLQ6NUI6 762 aa20.78■□□□□ 0.92
TUBB3-213ENST00000557262 COPS6Q7L5N1 327 aa20.78■□□□□ 0.92
TUBB3-213ENST00000557262 NECTIN2Q92692 538 aa20.78■□□□□ 0.92
TUBB3-213ENST00000557262 NLRP3Q96P20 1036 aa20.78■□□□□ 0.92
TUBB3-213ENST00000557262 PSMD1Q99460 953 aa20.78■□□□□ 0.92
TUBB3-213ENST00000557262 RIC1Q4ADV7 1423 aa20.78■□□□□ 0.92
TUBB3-213ENST00000557262 UTP14AQ9BVJ6 771 aaKnown RBP20.77■□□□□ 0.92
TUBB3-213ENST00000557262 LAS1LQ9Y4W2 734 aaKnown RBP20.77■□□□□ 0.92
TUBB3-213ENST00000557262 FZD9O00144 591 aa20.76■□□□□ 0.91
TUBB3-213ENST00000557262 AIMP1Q12904 312 aaKnown RBP20.76■□□□□ 0.91
TUBB3-213ENST00000557262 HSP90AB3PQ58FF7 597 aa20.76■□□□□ 0.91
TUBB3-213ENST00000557262 JDP2Q8WYK2 163 aa20.76■□□□□ 0.91
TUBB3-213ENST00000557262 DDX21Q9NR30 783 aaKnown RBP eCLIP20.76■□□□□ 0.91
TUBB3-213ENST00000557262 POTEIP0CG38 1075 aa20.75■□□□□ 0.91
TUBB3-213ENST00000557262 POTEJP0CG39 1038 aa20.75■□□□□ 0.91
TUBB3-213ENST00000557262 XAGE3Q8WTP9 111 aa20.75■□□□□ 0.91
TUBB3-213ENST00000557262 TAF1DQ9H5J8 278 aaPredicted RBP20.75■□□□□ 0.91
TUBB3-213ENST00000557262 ZNF541Q9H0D2 1346 aa20.75■□□□□ 0.91
TUBB3-213ENST00000557262 KRT24Q2M2I5 525 aa20.74■□□□□ 0.91
TUBB3-213ENST00000557262 C3orf67Q6ZVT6 689 aa20.74■□□□□ 0.91
TUBB3-213ENST00000557262 PRKRIP1Q9H875 184 aaPredicted RBP20.74■□□□□ 0.91
TUBB3-213ENST00000557262 PCNTO95613 3336 aa20.74■□□□□ 0.91
TUBB3-213ENST00000557262 TCIRG1Q13488 830 aa20.73■□□□□ 0.91
TUBB3-213ENST00000557262 LDHDQ86WU2 507 aa20.73■□□□□ 0.91
TUBB3-213ENST00000557262 HACL1Q9UJ83 578 aa20.73■□□□□ 0.91
TUBB3-213ENST00000557262 RNF123Q5XPI4 1314 aa20.73■□□□□ 0.91
TUBB3-213ENST00000557262 SNED1Q8TER0 1413 aa20.72■□□□□ 0.91
TUBB3-213ENST00000557262 TCERG1O14776 1098 aaKnown RBP20.72■□□□□ 0.91
TUBB3-213ENST00000557262 PPEF1O14829 653 aaPredicted RBP20.72■□□□□ 0.91
TUBB3-213ENST00000557262 NLRP10Q86W26 655 aa20.72■□□□□ 0.91
TUBB3-213ENST00000557262 TMX4Q9H1E5 349 aaPredicted RBP20.72■□□□□ 0.91
TUBB3-213ENST00000557262 HOXB7P09629 217 aa20.71■□□□□ 0.91
TUBB3-213ENST00000557262 GPC2Q8N158 579 aa20.71■□□□□ 0.91
TUBB3-213ENST00000557262 CFAP44Q96MT7 982 aa20.71■□□□□ 0.91
TUBB3-213ENST00000557262 SCN4AP35499 1836 aa20.7■□□□□ 0.9
TUBB3-213ENST00000557262 EPHX2P34913 555 aa20.7■□□□□ 0.9
TUBB3-213ENST00000557262 EIF6P56537 245 aaKnown RBP20.7■□□□□ 0.9
TUBB3-213ENST00000557262 EAPPQ56P03 285 aaPredicted RBP20.7■□□□□ 0.9
TUBB3-213ENST00000557262 CREBZFQ9NS37 354 aa20.7■□□□□ 0.9
TUBB3-213ENST00000557262 CHPF2Q9P2E5 772 aa20.7■□□□□ 0.9
TUBB3-213ENST00000557262 TRMT112Q9UI30 125 aaKnown RBP20.7■□□□□ 0.9
TUBB3-213ENST00000557262 BBOX1O75936 387 aa20.69■□□□□ 0.9
TUBB3-213ENST00000557262 HDGFL1Q5TGJ6 251 aa20.69■□□□□ 0.9
TUBB3-213ENST00000557262 PNMA8AQ86V59 439 aaPredicted RBP20.69■□□□□ 0.9
TUBB3-213ENST00000557262 LARGE2Q8N3Y3 721 aa20.69■□□□□ 0.9
TUBB3-213ENST00000557262 DBF4Q9UBU7 674 aaPredicted RBP20.69■□□□□ 0.9
TUBB3-213ENST00000557262 CLEC11AQ9Y240 323 aa20.69■□□□□ 0.9
TUBB3-213ENST00000557262 ATP6V0A2Q9Y487 856 aa20.69■□□□□ 0.9
TUBB3-213ENST00000557262 HCLS1P14317 486 aaPredicted RBP20.68■□□□□ 0.9
TUBB3-213ENST00000557262 ANKRD13DQ6ZTN6 518 aa20.68■□□□□ 0.9
TUBB3-213ENST00000557262 PLBD2Q8NHP8 589 aa20.68■□□□□ 0.9
TUBB3-213ENST00000557262 VPS33BQ9H267 617 aa20.68■□□□□ 0.9
TUBB3-213ENST00000557262 ITGBL1O95965 494 aaPredicted RBP20.67■□□□□ 0.9
TUBB3-213ENST00000557262 DUSP27Q5VZP5 1158 aa20.67■□□□□ 0.9
TUBB3-213ENST00000557262 GJA3Q9Y6H8 435 aa20.67■□□□□ 0.9
TUBB3-213ENST00000557262 SH3TC1Q8TE82 1336 aa20.67■□□□□ 0.9
TUBB3-213ENST00000557262 PASKQ96RG2 1323 aa20.67■□□□□ 0.9
TUBB3-213ENST00000557262 APAF1O14727 1248 aa20.66■□□□□ 0.9
TUBB3-213ENST00000557262 SLC51AQ86UW1 340 aa20.66■□□□□ 0.9
TUBB3-213ENST00000557262 SP8Q8IXZ3 490 aa20.66■□□□□ 0.9
TUBB3-213ENST00000557262 MBIPQ9NS73 344 aa20.66■□□□□ 0.9
TUBB3-213ENST00000557262 HYPKQ9NX55 129 aa20.66■□□□□ 0.9
TUBB3-213ENST00000557262 ABCC4O15439 1325 aa20.66■□□□□ 0.9
TUBB3-213ENST00000557262 ZNF853P0CG23 659 aa20.65■□□□□ 0.9
TUBB3-213ENST00000557262 DDX46Q7L014 1031 aaKnown RBP20.65■□□□□ 0.9
TUBB3-213ENST00000557262 NIM1KQ8IY84 436 aa20.65■□□□□ 0.9
TUBB3-213ENST00000557262 SUPT20HQ8NEM7 779 aa20.65■□□□□ 0.9
TUBB3-213ENST00000557262 PPIP5K2O43314 1243 aa20.64■□□□□ 0.89
TUBB3-213ENST00000557262 RTFDC1Q9BY42 306 aaPredicted RBP20.64■□□□□ 0.89
TUBB3-213ENST00000557262 LMOD1P29536 600 aaPredicted RBP20.63■□□□□ 0.89
TUBB3-213ENST00000557262 GNAI1P63096 354 aa20.63■□□□□ 0.89
TUBB3-213ENST00000557262 CALD1Q05682 793 aaKnown RBP20.63■□□□□ 0.89
TUBB3-213ENST00000557262 CNTROBQ8N137 903 aa20.63■□□□□ 0.89
TUBB3-213ENST00000557262 MPNDQ8N594 471 aa20.63■□□□□ 0.89
TUBB3-213ENST00000557262 ISCA1Q9BUE6 129 aa20.63■□□□□ 0.89
TUBB3-213ENST00000557262 MKRN1Q9UHC7 482 aaKnown RBP20.63■□□□□ 0.89
TUBB3-213ENST00000557262 COL4A5P29400 1685 aa20.63■□□□□ 0.89
TUBB3-213ENST00000557262 GRAPQ13588 217 aa20.62■□□□□ 0.89
TUBB3-213ENST00000557262 AOC3Q16853 763 aa20.62■□□□□ 0.89
TUBB3-213ENST00000557262 COL13A1Q5TAT6 717 aaPredicted RBP20.62■□□□□ 0.89
TUBB3-213ENST00000557262 DPP8Q6V1X1 898 aaPredicted RBP20.62■□□□□ 0.89
TUBB3-213ENST00000557262 GRAPLQ8TC17 118 aaPredicted RBP20.62■□□□□ 0.89
TUBB3-213ENST00000557262 IFT57Q9NWB7 429 aa20.62■□□□□ 0.89
TUBB3-213ENST00000557262 TMEM88BA6NKF7 163 aa20.61■□□□□ 0.89
TUBB3-213ENST00000557262 ATP5J2-PTCD1G3V325 749 aa20.61■□□□□ 0.89
TUBB3-213ENST00000557262 HSPA1AP0DMV8 641 aaKnown RBP20.61■□□□□ 0.89
TUBB3-213ENST00000557262 HSPA1BP0DMV9 641 aaKnown RBP20.61■□□□□ 0.89
TUBB3-213ENST00000557262 MAP1SQ66K74 1059 aaPredicted RBP20.61■□□□□ 0.89
TUBB3-213ENST00000557262 ZNF428Q96B54 188 aa20.61■□□□□ 0.89
TUBB3-213ENST00000557262 ANKRD36CQ5JPF3 1778 aa20.61■□□□□ 0.89
TUBB3-213ENST00000557262 EPS15P42566 896 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms