RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 RPGRQ92834 1020 aaKnown RBP24.14■■□□□ 1.45
VIPAS39-209ENST00000556909 LAMB2P55268 1798 aa24.14■■□□□ 1.45
VIPAS39-209ENST00000556909 RNF123Q5XPI4 1314 aa24.13■■□□□ 1.45
VIPAS39-209ENST00000556909 HOXA10P31260 410 aaPredicted RBP24.13■■□□□ 1.45
VIPAS39-209ENST00000556909 SUSD4Q5VX71 490 aa24.13■■□□□ 1.45
VIPAS39-209ENST00000556909 ZNF34Q8IZ26 560 aa24.13■■□□□ 1.45
VIPAS39-209ENST00000556909 CNTNAP1P78357 1384 aa24.13■■□□□ 1.45
VIPAS39-209ENST00000556909 LTBP1Q14766 1721 aa24.13■■□□□ 1.45
VIPAS39-209ENST00000556909 NTSR2O95665 410 aa24.12■■□□□ 1.45
VIPAS39-209ENST00000556909 EPHX2P34913 555 aa24.12■■□□□ 1.45
VIPAS39-209ENST00000556909 CC2D2BQ6DHV5 1058 aa24.12■■□□□ 1.45
VIPAS39-209ENST00000556909 TSPYL4Q9UJ04 414 aa24.12■■□□□ 1.45
VIPAS39-209ENST00000556909 ITGBL1O95965 494 aaPredicted RBP24.11■■□□□ 1.45
VIPAS39-209ENST00000556909 GIGYF2Q6Y7W6 1299 aaKnown RBP24.11■■□□□ 1.45
VIPAS39-209ENST00000556909 GPC2Q8N158 579 aa24.11■■□□□ 1.45
VIPAS39-209ENST00000556909 LRP10Q7Z4F1 713 aa24.1■■□□□ 1.45
VIPAS39-209ENST00000556909 SLC51AQ86UW1 340 aa24.1■■□□□ 1.45
VIPAS39-209ENST00000556909 C3orf67Q6ZVT6 689 aa24.09■■□□□ 1.45
VIPAS39-209ENST00000556909 JDP2Q8WYK2 163 aa24.09■■□□□ 1.45
VIPAS39-209ENST00000556909 CLEC11AQ9Y240 323 aa24.09■■□□□ 1.45
VIPAS39-209ENST00000556909 PPEF1O14829 653 aaPredicted RBP24.08■■□□□ 1.45
VIPAS39-209ENST00000556909 CAPN15O75808 1086 aa24.08■■□□□ 1.45
VIPAS39-209ENST00000556909 PDIA6Q15084 440 aa24.08■■□□□ 1.45
VIPAS39-209ENST00000556909 PNMA8AQ86V59 439 aaPredicted RBP24.08■■□□□ 1.45
VIPAS39-209ENST00000556909 RBM17Q96I25 401 aaKnown RBP24.08■■□□□ 1.45
VIPAS39-209ENST00000556909 CRAMP1Q96RY5 1269 aa24.08■■□□□ 1.45
VIPAS39-209ENST00000556909 TMEM88BA6NKF7 163 aa24.07■■□□□ 1.44
VIPAS39-209ENST00000556909 RIPK4P57078 832 aa24.07■■□□□ 1.44
VIPAS39-209ENST00000556909 PARP10Q53GL7 1025 aa24.07■■□□□ 1.44
VIPAS39-209ENST00000556909 PPP1R42Q7Z4L9 355 aa24.07■■□□□ 1.44
VIPAS39-209ENST00000556909 EIF2S2P20042 333 aaKnown RBP24.06■■□□□ 1.44
VIPAS39-209ENST00000556909 PROSER3Q2NL68 480 aa24.06■■□□□ 1.44
VIPAS39-209ENST00000556909 GRIPAP1Q4V328 841 aa24.06■■□□□ 1.44
VIPAS39-209ENST00000556909 ANXA1P04083 346 aa24.05■■□□□ 1.44
VIPAS39-209ENST00000556909 EIF6P56537 245 aaKnown RBP24.05■■□□□ 1.44
VIPAS39-209ENST00000556909 MAP1SQ66K74 1059 aaPredicted RBP24.05■■□□□ 1.44
VIPAS39-209ENST00000556909 LARGE2Q8N3Y3 721 aa24.05■■□□□ 1.44
VIPAS39-209ENST00000556909 BABAM1Q9NWV8 329 aa24.05■■□□□ 1.44
VIPAS39-209ENST00000556909 GJA3Q9Y6H8 435 aa24.05■■□□□ 1.44
VIPAS39-209ENST00000556909 TCERG1O14776 1098 aaKnown RBP24.04■■□□□ 1.44
VIPAS39-209ENST00000556909 TRPM7Q96QT4 1865 aa24.03■■□□□ 1.44
VIPAS39-209ENST00000556909 TMPOP42166 694 aaKnown RBP24.03■■□□□ 1.44
VIPAS39-209ENST00000556909 RALBP1Q15311 655 aa24.03■■□□□ 1.44
VIPAS39-209ENST00000556909 CNTROBQ8N137 903 aa24.03■■□□□ 1.44
VIPAS39-209ENST00000556909 NLRP3Q96P20 1036 aa24.03■■□□□ 1.44
VIPAS39-209ENST00000556909 UTP14AQ9BVJ6 771 aaKnown RBP24.03■■□□□ 1.44
VIPAS39-209ENST00000556909 VEGFBP49765 207 aa24.02■■□□□ 1.44
VIPAS39-209ENST00000556909 LMOD3Q0VAK6 560 aa24.02■■□□□ 1.44
VIPAS39-209ENST00000556909 ABCC4O15439 1325 aa24.02■■□□□ 1.44
VIPAS39-209ENST00000556909 TAF1P21675 1872 aa24.02■■□□□ 1.44
VIPAS39-209ENST00000556909 FOXN1O15353 648 aa24.01■■□□□ 1.43
VIPAS39-209ENST00000556909 SCNN1DP51172 638 aa24.01■■□□□ 1.43
VIPAS39-209ENST00000556909 SLC10A5Q5PT55 438 aa24.01■■□□□ 1.43
VIPAS39-209ENST00000556909 LMOD1P29536 600 aaPredicted RBP24■■□□□ 1.43
VIPAS39-209ENST00000556909 NIM1KQ8IY84 436 aa24■■□□□ 1.43
VIPAS39-209ENST00000556909 ATP6V0A2Q9Y487 856 aa24■■□□□ 1.43
VIPAS39-209ENST00000556909 DDX60Q8IY21 1712 aaKnown RBP24■■□□□ 1.43
VIPAS39-209ENST00000556909 PPIP5K2O43314 1243 aa23.99■■□□□ 1.43
VIPAS39-209ENST00000556909 NECTIN2Q92692 538 aa23.99■■□□□ 1.43
VIPAS39-209ENST00000556909 RASSF10A6NK89 507 aa23.98■■□□□ 1.43
VIPAS39-209ENST00000556909 EPS15P42566 896 aa23.98■■□□□ 1.43
VIPAS39-209ENST00000556909 HSP90AB3PQ58FF7 597 aa23.98■■□□□ 1.43
VIPAS39-209ENST00000556909 COPS6Q7L5N1 327 aa23.98■■□□□ 1.43
VIPAS39-209ENST00000556909 XAGE3Q8WTP9 111 aa23.98■■□□□ 1.43
VIPAS39-209ENST00000556909 THSD7BQ9C0I4 1608 aa23.98■■□□□ 1.43
VIPAS39-209ENST00000556909 LRRC37AA6NMS7 1700 aa23.98■■□□□ 1.43
VIPAS39-209ENST00000556909 AIMP1Q12904 312 aaKnown RBP23.97■■□□□ 1.43
VIPAS39-209ENST00000556909 AOC3Q16853 763 aa23.97■■□□□ 1.43
VIPAS39-209ENST00000556909 NLRP10Q86W26 655 aa23.97■■□□□ 1.43
VIPAS39-209ENST00000556909 CCDC146Q8IYE0 955 aa23.97■■□□□ 1.43
VIPAS39-209ENST00000556909 TMX4Q9H1E5 349 aaPredicted RBP23.97■■□□□ 1.43
VIPAS39-209ENST00000556909 KRT24Q2M2I5 525 aa23.96■■□□□ 1.43
VIPAS39-209ENST00000556909 MYBBP1AQ9BQG0 1328 aaKnown RBP23.95■■□□□ 1.42
VIPAS39-209ENST00000556909 HCLS1P14317 486 aaPredicted RBP23.95■■□□□ 1.42
VIPAS39-209ENST00000556909 AIDAQ96BJ3 306 aa23.95■■□□□ 1.42
VIPAS39-209ENST00000556909 RTFDC1Q9BY42 306 aaPredicted RBP23.95■■□□□ 1.42
VIPAS39-209ENST00000556909 VPS33BQ9H267 617 aa23.95■■□□□ 1.42
VIPAS39-209ENST00000556909 DDX21Q9NR30 783 aaKnown RBP eCLIP23.95■■□□□ 1.42
VIPAS39-209ENST00000556909 DUOX1Q9NRD9 1551 aa23.95■■□□□ 1.42
VIPAS39-209ENST00000556909 TCIRG1Q13488 830 aa23.94■■□□□ 1.42
VIPAS39-209ENST00000556909 NEUROD2Q15784 382 aa23.94■■□□□ 1.42
VIPAS39-209ENST00000556909 DEFB115Q30KQ5 88 aa23.94■■□□□ 1.42
VIPAS39-209ENST00000556909 USP50Q70EL3 339 aaPredicted RBP23.94■■□□□ 1.42
VIPAS39-209ENST00000556909 PRDM10Q9NQV6 1147 aa23.94■■□□□ 1.42
VIPAS39-209ENST00000556909 ABT1Q9ULW3 272 aaKnown RBP23.94■■□□□ 1.42
VIPAS39-209ENST00000556909 SH3TC1Q8TE82 1336 aa23.93■■□□□ 1.42
VIPAS39-209ENST00000556909 CHL1O00533 1208 aa23.93■■□□□ 1.42
VIPAS39-209ENST00000556909 CTCFP49711 727 aaPredicted RBP23.93■■□□□ 1.42
VIPAS39-209ENST00000556909 SUPT20HQ8NEM7 779 aa23.93■■□□□ 1.42
VIPAS39-209ENST00000556909 WBP1LQ9NX94 342 aa23.93■■□□□ 1.42
VIPAS39-209ENST00000556909 BBOX1O75936 387 aa23.92■■□□□ 1.42
VIPAS39-209ENST00000556909 FMR1Q06787 632 aaKnown RBP eCLIP23.92■■□□□ 1.42
VIPAS39-209ENST00000556909 DPP8Q6V1X1 898 aaPredicted RBP23.92■■□□□ 1.42
VIPAS39-209ENST00000556909 SP8Q8IXZ3 490 aa23.92■■□□□ 1.42
VIPAS39-209ENST00000556909 CHPF2Q9P2E5 772 aa23.92■■□□□ 1.42
VIPAS39-209ENST00000556909 TRMT112Q9UI30 125 aaKnown RBP23.92■■□□□ 1.42
VIPAS39-209ENST00000556909 ZNRF3Q9ULT6 936 aa23.92■■□□□ 1.42
VIPAS39-209ENST00000556909 TRIM35Q9UPQ4 493 aa23.92■■□□□ 1.42
VIPAS39-209ENST00000556909 CXCL9Q07325 125 aa23.91■■□□□ 1.42
VIPAS39-209ENST00000556909 GPRC5DQ9NZD1 345 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms