RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 SLC26A8Q96RN1 970 aa8.29□□□□□ -1.08
VPS33B-203ENST00000554264 DNMT3LQ9UJW3 386 aa8.29□□□□□ -1.08
VPS33B-203ENST00000554264 HRH3Q9Y5N1 445 aa8.29□□□□□ -1.08
VPS33B-203ENST00000554264 TET3O43151 1660 aa8.29□□□□□ -1.08
VPS33B-203ENST00000554264 SPATA31A6Q5VVP1 1343 aa8.29□□□□□ -1.08
VPS33B-203ENST00000554264 NWD1Q149M9 1564 aa8.28□□□□□ -1.08
VPS33B-203ENST00000554264 FIGNL2A6NMB9 653 aa8.28□□□□□ -1.08
VPS33B-203ENST00000554264 GNRH1P01148 92 aa8.28□□□□□ -1.08
VPS33B-203ENST00000554264 LMOD1P29536 600 aaPredicted RBP8.28□□□□□ -1.08
VPS33B-203ENST00000554264 CLDN10P78369 228 aa8.28□□□□□ -1.08
VPS33B-203ENST00000554264 FOXD4L5Q5VV16 416 aaPredicted RBP8.28□□□□□ -1.08
VPS33B-203ENST00000554264 ETNK1Q9HBU6 452 aa8.28□□□□□ -1.08
VPS33B-203ENST00000554264 MKRN1Q9UHC7 482 aaKnown RBP8.28□□□□□ -1.08
VPS33B-203ENST00000554264 KIAA1024Q9UPX6 916 aa8.28□□□□□ -1.08
VPS33B-203ENST00000554264 NOD1Q9Y239 953 aa8.28□□□□□ -1.08
VPS33B-203ENST00000554264 LMTK2Q8IWU2 1503 aa8.28□□□□□ -1.08
VPS33B-203ENST00000554264 FGD6Q6ZV73 1430 aa8.28□□□□□ -1.08
VPS33B-203ENST00000554264 CFAP65Q6ZU64 1925 aaKnown RBP8.27□□□□□ -1.09
VPS33B-203ENST00000554264 PHLPP1O60346 1717 aa8.27□□□□□ -1.09
VPS33B-203ENST00000554264 TTLL8A6PVC2 850 aa8.27□□□□□ -1.09
VPS33B-203ENST00000554264 MEN1O00255 615 aa8.27□□□□□ -1.09
VPS33B-203ENST00000554264 CLN3Q13286 438 aa8.27□□□□□ -1.09
VPS33B-203ENST00000554264 MEX3CQ5U5Q3 659 aaKnown RBP8.27□□□□□ -1.09
VPS33B-203ENST00000554264 TRIM52Q96A61 297 aa8.27□□□□□ -1.09
VPS33B-203ENST00000554264 KIFC2Q96AC6 838 aa8.27□□□□□ -1.09
VPS33B-203ENST00000554264 SIRT1Q96EB6 747 aa8.27□□□□□ -1.09
VPS33B-203ENST00000554264 POLMQ9NP87 494 aaPredicted RBP8.27□□□□□ -1.09
VPS33B-203ENST00000554264 RRP7BPQ9NSQ0 103 aa8.27□□□□□ -1.09
VPS33B-203ENST00000554264 SLC52A1Q9NWF4 448 aa8.27□□□□□ -1.09
VPS33B-203ENST00000554264 NCOA3Q9Y6Q9 1424 aa8.27□□□□□ -1.09
VPS33B-203ENST00000554264 SETD1AO15047 1707 aaKnown RBP8.26□□□□□ -1.09
VPS33B-203ENST00000554264 ADGRB3O60242 1522 aa8.26□□□□□ -1.09
VPS33B-203ENST00000554264 TMEM229AB2RXF0 380 aa8.26□□□□□ -1.09
VPS33B-203ENST00000554264 DKK1O94907 266 aa8.26□□□□□ -1.09
VPS33B-203ENST00000554264 RFX1P22670 979 aa8.26□□□□□ -1.09
VPS33B-203ENST00000554264 GTF2IP78347 998 aa8.26□□□□□ -1.09
VPS33B-203ENST00000554264 SRPK2P78362 688 aaKnown RBP8.26□□□□□ -1.09
VPS33B-203ENST00000554264 RNF217Q8TC41 542 aa8.26□□□□□ -1.09
VPS33B-203ENST00000554264 XAGE2Q96GT9 111 aa8.26□□□□□ -1.09
VPS33B-203ENST00000554264 YTHDC1Q96MU7 727 aaKnown RBP8.26□□□□□ -1.09
VPS33B-203ENST00000554264 NOS1P29475 1434 aa8.26□□□□□ -1.09
VPS33B-203ENST00000554264 PLEKHG1Q9ULL1 1385 aa8.25□□□□□ -1.09
VPS33B-203ENST00000554264 RNF144AP50876 292 aaPredicted RBP8.25□□□□□ -1.09
VPS33B-203ENST00000554264 CNKSR1Q969H4 720 aa8.25□□□□□ -1.09
VPS33B-203ENST00000554264 ESYT1Q9BSJ8 1104 aa8.25□□□□□ -1.09
VPS33B-203ENST00000554264 ABCC5O15440 1437 aa8.25□□□□□ -1.09
VPS33B-203ENST00000554264 COL16A1Q07092 1604 aaPredicted RBP8.25□□□□□ -1.09
VPS33B-203ENST00000554264 ANKRD30AQ9BXX3 1397 aa8.24□□□□□ -1.09
VPS33B-203ENST00000554264 SETD5Q9C0A6 1442 aa8.24□□□□□ -1.09
VPS33B-203ENST00000554264 PPP1R15AO75807 674 aaPredicted RBP8.24□□□□□ -1.09
VPS33B-203ENST00000554264 RXRBP28702 533 aa8.24□□□□□ -1.09
VPS33B-203ENST00000554264 GDF10P55107 478 aa8.24□□□□□ -1.09
VPS33B-203ENST00000554264 CENPCQ03188 943 aa8.24□□□□□ -1.09
VPS33B-203ENST00000554264 CDCA8Q53HL2 280 aa8.24□□□□□ -1.09
VPS33B-203ENST00000554264 ERICH6Q7L0X2 663 aa8.24□□□□□ -1.09
VPS33B-203ENST00000554264 CCDC82Q8N4S0 544 aa8.24□□□□□ -1.09
VPS33B-203ENST00000554264 OGFOD1Q8N543 542 aa8.24□□□□□ -1.09
VPS33B-203ENST00000554264 GRIP2Q9C0E4 1043 aa8.24□□□□□ -1.09
VPS33B-203ENST00000554264 LRP6O75581 1613 aa8.24□□□□□ -1.09
VPS33B-203ENST00000554264 DAPK1P53355 1430 aa8.23□□□□□ -1.09
VPS33B-203ENST00000554264 MAN1A2O60476 641 aa8.23□□□□□ -1.09
VPS33B-203ENST00000554264 INHAP05111 366 aa8.23□□□□□ -1.09
VPS33B-203ENST00000554264 CRTC2Q53ET0 693 aaPredicted RBP8.23□□□□□ -1.09
VPS33B-203ENST00000554264 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.23□□□□□ -1.09
VPS33B-203ENST00000554264 FHDC1Q9C0D6 1143 aaPredicted RBP8.23□□□□□ -1.09
VPS33B-203ENST00000554264 TBX22Q9Y458 520 aa8.23□□□□□ -1.09
VPS33B-203ENST00000554264 RPRD2Q5VT52 1461 aaKnown RBP8.23□□□□□ -1.09
VPS33B-203ENST00000554264 CDK12Q9NYV4 1490 aaPredicted RBP8.23□□□□□ -1.09
VPS33B-203ENST00000554264 CROCC2H7BZ55 1655 aa8.23□□□□□ -1.09
VPS33B-203ENST00000554264 AHDC1Q5TGY3 1603 aaPredicted RBP8.22□□□□□ -1.09
VPS33B-203ENST00000554264 ZFYVE9O95405 1425 aa8.22□□□□□ -1.09
VPS33B-203ENST00000554264 ATF3P18847 181 aa8.22□□□□□ -1.09
VPS33B-203ENST00000554264 PRICKLE2Q7Z3G6 844 aa8.22□□□□□ -1.09
VPS33B-203ENST00000554264 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.22□□□□□ -1.09
VPS33B-203ENST00000554264 NLRP3Q96P20 1036 aa8.22□□□□□ -1.09
VPS33B-203ENST00000554264 C19orf44Q9H6X5 657 aa8.22□□□□□ -1.09
VPS33B-203ENST00000554264 SERTAD1Q9UHV2 236 aa8.22□□□□□ -1.09
VPS33B-203ENST00000554264 PIK3R4Q99570 1358 aa8.22□□□□□ -1.09
VPS33B-203ENST00000554264 RIMS2Q9UQ26 1411 aa8.21□□□□□ -1.09
VPS33B-203ENST00000554264 WASLO00401 505 aaPredicted RBP8.21□□□□□ -1.1
VPS33B-203ENST00000554264 RASA1P20936 1047 aa8.21□□□□□ -1.1
VPS33B-203ENST00000554264 PTK7Q13308 1070 aa8.21□□□□□ -1.1
VPS33B-203ENST00000554264 CCDC102BQ68D86 513 aa8.21□□□□□ -1.1
VPS33B-203ENST00000554264 TRIM50Q86XT4 487 aa8.21□□□□□ -1.1
VPS33B-203ENST00000554264 ZNF594Q96JF6 807 aaPredicted RBP8.21□□□□□ -1.1
VPS33B-203ENST00000554264 VRTNQ9H8Y1 702 aa8.21□□□□□ -1.1
VPS33B-203ENST00000554264 DNAAF2Q9NVR5 837 aaKnown RBP8.21□□□□□ -1.1
VPS33B-203ENST00000554264 ZNF358Q9NW07 568 aa8.21□□□□□ -1.1
VPS33B-203ENST00000554264 SERPINA10Q9UK55 444 aa8.21□□□□□ -1.1
VPS33B-203ENST00000554264 PTPN23Q9H3S7 1636 aa8.21□□□□□ -1.1
VPS33B-203ENST00000554264 SHPRHQ149N8 1683 aa8.21□□□□□ -1.1
VPS33B-203ENST00000554264 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.2□□□□□ -1.1
VPS33B-203ENST00000554264 CCER2I3L3R5 266 aa8.2□□□□□ -1.1
VPS33B-203ENST00000554264 GPC1P35052 558 aa8.2□□□□□ -1.1
VPS33B-203ENST00000554264 POU4F2Q12837 409 aa8.2□□□□□ -1.1
VPS33B-203ENST00000554264 ESCO1Q5FWF5 840 aa8.2□□□□□ -1.1
VPS33B-203ENST00000554264 TPCN2Q8NHX9 752 aa8.2□□□□□ -1.1
VPS33B-203ENST00000554264 ZNF775Q96BV0 537 aaPredicted RBP8.2□□□□□ -1.1
VPS33B-203ENST00000554264 SLC4A9Q96Q91 983 aa8.2□□□□□ -1.1
VPS33B-203ENST00000554264 SUPT16HQ9Y5B9 1047 aaKnown RBP8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms