RNA–Protein interactions for RNA: ENST00000553065.1

DDX23-217, Transcript of DEAD-box helicase 23, human

TSL 2

Gene DDX23, Length 336 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX23-217	ENST00000553065	NYX	Q9GZU5	481 aa		13.84	□□□□□ -0.19
DDX23-217	ENST00000553065	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
DDX23-217	ENST00000553065	MBIP	Q9NS73	344 aa		13.84	□□□□□ -0.19
DDX23-217	ENST00000553065	LAS1L	Q9Y4W2	734 aa	Known RBP	13.84	□□□□□ -0.19
DDX23-217	ENST00000553065	COL4A5	P29400	1685 aa		13.83	□□□□□ -0.2
DDX23-217	ENST00000553065	GTF2E1	P29083	439 aa	Predicted RBP	13.83	□□□□□ -0.2
DDX23-217	ENST00000553065	LMOD3	Q0VAK6	560 aa		13.83	□□□□□ -0.2
DDX23-217	ENST00000553065	TCIRG1	Q13488	830 aa		13.83	□□□□□ -0.2
DDX23-217	ENST00000553065	WDR43	Q15061	677 aa	Known RBP eCLIP	13.83	□□□□□ -0.2	3e-6	■□□□□ 11.1
DDX23-217	ENST00000553065	CCDC93	Q567U6	631 aa		13.83	□□□□□ -0.2
DDX23-217	ENST00000553065	NLRP10	Q86W26	655 aa		13.83	□□□□□ -0.2
DDX23-217	ENST00000553065	CHPF2	Q9P2E5	772 aa		13.83	□□□□□ -0.2
DDX23-217	ENST00000553065	WDR90	Q96KV7	1748 aa		13.83	□□□□□ -0.2
DDX23-217	ENST00000553065	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.83	□□□□□ -0.2
DDX23-217	ENST00000553065	TIAM2	Q8IVF5	1701 aa		13.82	□□□□□ -0.2
DDX23-217	ENST00000553065	FZD9	O00144	591 aa		13.82	□□□□□ -0.2
DDX23-217	ENST00000553065	SOGA3	Q5TF21	947 aa		13.82	□□□□□ -0.2
DDX23-217	ENST00000553065	DPY19L2	Q6NUT2	758 aa		13.82	□□□□□ -0.2
DDX23-217	ENST00000553065	CRAMP1	Q96RY5	1269 aa		13.82	□□□□□ -0.2
DDX23-217	ENST00000553065	ZNF541	Q9H0D2	1346 aa		13.82	□□□□□ -0.2
DDX23-217	ENST00000553065	RIC1	Q4ADV7	1423 aa		13.81	□□□□□ -0.2
DDX23-217	ENST00000553065	HCLS1	P14317	486 aa	Predicted RBP	13.81	□□□□□ -0.2
DDX23-217	ENST00000553065	DUSP27	Q5VZP5	1158 aa		13.81	□□□□□ -0.2
DDX23-217	ENST00000553065	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.81	□□□□□ -0.2
DDX23-217	ENST00000553065	RTKN2	Q8IZC4	609 aa		13.81	□□□□□ -0.2
DDX23-217	ENST00000553065	SMC1B	Q8NDV3	1235 aa		13.81	□□□□□ -0.2
DDX23-217	ENST00000553065	UTP14A	Q9BVJ6	771 aa	Known RBP	13.81	□□□□□ -0.2
DDX23-217	ENST00000553065	TCERG1	O14776	1098 aa	Known RBP	13.8	□□□□□ -0.2
DDX23-217	ENST00000553065	PARP10	Q53GL7	1025 aa		13.8	□□□□□ -0.2
DDX23-217	ENST00000553065	C8orf58	Q8NAV2	365 aa		13.8	□□□□□ -0.2
DDX23-217	ENST00000553065	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.8	□□□□□ -0.2
DDX23-217	ENST00000553065	PSMD1	Q99460	953 aa		13.8	□□□□□ -0.2
DDX23-217	ENST00000553065	ISCA1	Q9BUE6	129 aa		13.8	□□□□□ -0.2
DDX23-217	ENST00000553065	IARS	P41252	1262 aa	Known RBP	13.79	□□□□□ -0.2
DDX23-217	ENST00000553065	PPP1R42	Q7Z4L9	355 aa		13.79	□□□□□ -0.2
DDX23-217	ENST00000553065	PHAX	Q9H814	394 aa	Known RBP	13.79	□□□□□ -0.2
DDX23-217	ENST00000553065	ELL2	O00472	640 aa	Predicted RBP	13.78	□□□□□ -0.2
DDX23-217	ENST00000553065	HOXB7	P09629	217 aa		13.78	□□□□□ -0.2
DDX23-217	ENST00000553065	HDGFL1	Q5TGJ6	251 aa		13.78	□□□□□ -0.2
DDX23-217	ENST00000553065	ANKRD13D	Q6ZTN6	518 aa		13.78	□□□□□ -0.2
DDX23-217	ENST00000553065	TSPYL6	Q8N831	410 aa		13.78	□□□□□ -0.2
DDX23-217	ENST00000553065	JMY	Q8N9B5	988 aa		13.78	□□□□□ -0.2
DDX23-217	ENST00000553065	KLRG1	Q96E93	195 aa		13.78	□□□□□ -0.2
DDX23-217	ENST00000553065	RBM17	Q96I25	401 aa	Known RBP	13.78	□□□□□ -0.2
DDX23-217	ENST00000553065	NLRP3	Q96P20	1036 aa		13.78	□□□□□ -0.2
DDX23-217	ENST00000553065	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.78	□□□□□ -0.2
DDX23-217	ENST00000553065	ATP5J2-PTCD1	G3V325	749 aa		13.77	□□□□□ -0.21
DDX23-217	ENST00000553065	ABCC4	O15439	1325 aa		13.77	□□□□□ -0.21
DDX23-217	ENST00000553065	ITGBL1	O95965	494 aa	Predicted RBP	13.77	□□□□□ -0.21
DDX23-217	ENST00000553065	COL4A1	P02462	1669 aa		13.77	□□□□□ -0.21
DDX23-217	ENST00000553065	PLBD2	Q8NHP8	589 aa		13.77	□□□□□ -0.21
DDX23-217	ENST00000553065	RPGR	Q92834	1020 aa	Known RBP	13.77	□□□□□ -0.21
DDX23-217	ENST00000553065	IFT57	Q9NWB7	429 aa		13.77	□□□□□ -0.21
DDX23-217	ENST00000553065	DBF4	Q9UBU7	674 aa	Predicted RBP	13.77	□□□□□ -0.21
DDX23-217	ENST00000553065	TRIM28	Q13263	835 aa	Known RBP	13.76	□□□□□ -0.21
DDX23-217	ENST00000553065	CC2D2B	Q6DHV5	1058 aa		13.76	□□□□□ -0.21
DDX23-217	ENST00000553065	TRMT112	Q9UI30	125 aa	Known RBP	13.76	□□□□□ -0.21
DDX23-217	ENST00000553065	ATP6V0A2	Q9Y487	856 aa		13.76	□□□□□ -0.21
DDX23-217	ENST00000553065	PPEF1	O14829	653 aa	Predicted RBP	13.75	□□□□□ -0.21
DDX23-217	ENST00000553065	HSP90AB3P	Q58FF7	597 aa		13.75	□□□□□ -0.21
DDX23-217	ENST00000553065	CHADL	Q6NUI6	762 aa		13.75	□□□□□ -0.21
DDX23-217	ENST00000553065	FAM89A	Q96GI7	184 aa		13.75	□□□□□ -0.21
DDX23-217	ENST00000553065	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.75	□□□□□ -0.21
DDX23-217	ENST00000553065	TAF1	P21675	1872 aa		13.75	□□□□□ -0.21
DDX23-217	ENST00000553065	PASK	Q96RG2	1323 aa		13.74	□□□□□ -0.21
DDX23-217	ENST00000553065	BBOX1	O75936	387 aa		13.74	□□□□□ -0.21
DDX23-217	ENST00000553065	GNAI1	P63096	354 aa		13.74	□□□□□ -0.21
DDX23-217	ENST00000553065	SP8	Q8IXZ3	490 aa		13.74	□□□□□ -0.21
DDX23-217	ENST00000553065	HYPK	Q9NX55	129 aa		13.74	□□□□□ -0.21
DDX23-217	ENST00000553065	LAMB2	P55268	1798 aa		13.73	□□□□□ -0.21
DDX23-217	ENST00000553065	LTBP1	Q14766	1721 aa		13.73	□□□□□ -0.21
DDX23-217	ENST00000553065	SH3TC1	Q8TE82	1336 aa		13.73	□□□□□ -0.21
DDX23-217	ENST00000553065	SCNN1D	P51172	638 aa		13.73	□□□□□ -0.21
DDX23-217	ENST00000553065	SF3B3	Q15393	1217 aa	Known RBP	13.73	□□□□□ -0.21
DDX23-217	ENST00000553065	WWC1	Q8IX03	1113 aa		13.73	□□□□□ -0.21
DDX23-217	ENST00000553065	CELF1	Q92879	486 aa	Known RBP	13.73	□□□□□ -0.21
DDX23-217	ENST00000553065	RNF123	Q5XPI4	1314 aa		13.72	□□□□□ -0.21
DDX23-217	ENST00000553065	EPS15	P42566	896 aa		13.72	□□□□□ -0.21
DDX23-217	ENST00000553065	AOC3	Q16853	763 aa		13.72	□□□□□ -0.21
DDX23-217	ENST00000553065	RTL5	Q5HYW3	569 aa	Predicted RBP	13.72	□□□□□ -0.21
DDX23-217	ENST00000553065	GPC2	Q8N158	579 aa		13.72	□□□□□ -0.21
DDX23-217	ENST00000553065	JARID2	Q92833	1246 aa	Predicted RBP	13.72	□□□□□ -0.21
DDX23-217	ENST00000553065	TSR2	Q969E8	191 aa	Known RBP	13.72	□□□□□ -0.21
DDX23-217	ENST00000553065	ANKRD36C	Q5JPF3	1778 aa		13.72	□□□□□ -0.21
DDX23-217	ENST00000553065	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.71	□□□□□ -0.21
DDX23-217	ENST00000553065	EPHX2	P34913	555 aa		13.71	□□□□□ -0.21
DDX23-217	ENST00000553065	FMR1	Q06787	632 aa	Known RBP eCLIP	13.71	□□□□□ -0.21	1e-6	■□□□□ 10
DDX23-217	ENST00000553065	CXCL9	Q07325	125 aa		13.71	□□□□□ -0.21
DDX23-217	ENST00000553065	GRAP	Q13588	217 aa		13.71	□□□□□ -0.21
DDX23-217	ENST00000553065	CCDC27	Q2M243	656 aa		13.71	□□□□□ -0.21
DDX23-217	ENST00000553065	GRIPAP1	Q4V328	841 aa		13.71	□□□□□ -0.21
DDX23-217	ENST00000553065	G2E3	Q7L622	706 aa		13.71	□□□□□ -0.21
DDX23-217	ENST00000553065	GRAPL	Q8TC17	118 aa	Predicted RBP	13.71	□□□□□ -0.21
DDX23-217	ENST00000553065	HACL1	Q9UJ83	578 aa		13.71	□□□□□ -0.21
DDX23-217	ENST00000553065	SCN4A	P35499	1836 aa		13.71	□□□□□ -0.22
DDX23-217	ENST00000553065	ADAMTSL1	Q8N6G6	1762 aa		13.71	□□□□□ -0.22
DDX23-217	ENST00000553065	DDX60	Q8IY21	1712 aa	Known RBP	13.7	□□□□□ -0.22
DDX23-217	ENST00000553065	YDJC	A8MPS7	323 aa		13.7	□□□□□ -0.22
DDX23-217	ENST00000553065	IFFO2	Q5TF58	517 aa		13.7	□□□□□ -0.22
DDX23-217	ENST00000553065	LDHD	Q86WU2	507 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms